BAC Information

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BAC

Clone NameMSMg01-336F20
Chromosome18 (Build37)
Map Location 56,616,191 - 56,616,705
singlet/doubletsinglet
Overlap geneGramd3
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432
Downstream geneLOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336F20.T7 (MSMg01no336_f20.b1)MSMg01-336F20.TJ (MSMg01no336_f20.g1)
ACCAG451401AG451402
length742748
length of high quality
(start - end)
464 (62 - 525)525 (69 - 593)
definitionCHROMAT_FILE: MSMg01no336_f20.b1 PHD_FILE: MSMg01no336_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:24 2005CHROMAT_FILE: MSMg01no336_f20.g1 PHD_FILE: MSMg01no336_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTCAC
TCTGTACACCAGGCTGGCCTCAAACTCAGAAATCTGCCTACCTCTGCCTC
CCAAGTACTGGGCTAAAGTGGCAGTGGCGATAAGAAGCAGAGGCAGGCCC
GTTGTTACTTTTCTTTTTCTCTTTCTTTTTATGTTATTAGTTTTATAAGC
TGATTTTTTATTCTTTCCATAGTCAAAGTTAAATGAACTGGTGCGCAGAA
TGCGTAATATGCACCTCTTCCAACGTGAGCATTGCAGATAACTATTCAGT
CACTTCACTACTTTTCTTATGTGCACAGCTTATTCCATGCTGAGCCAGTG
TATGATGGAATATTCCCACTTTCTGATGAGATGCCCTATGTAGGTGCTTG
TGGGGCAGTGGACTGTGCCCCCATACAGAAGAACTGGTAAGGTAGTAGCA
AGTTCAAAATCTCGATAAAGGAGTTCAAACTAGCTTTTGAACTAGCTCCT
GACCAGGATCCTGTCCTGGAGCTGTTAACTGTCAAGTATTGACGTTAAAG
GTATTCACCAGCATGCCTGGATTATTCTGTTATCTTAACTTAACCTGATT
TTTATTTATTAGCATGTGTGTGTCAGAATAAATGGGTGCTGCATGTGTGT
GGATGCCACCGANACGGAAAATGAACTGGATCTCCCCGCTGGAGTTAATT
GGGGGCGGAGCCCTTTGAAGGGGGGTTCGGGGAAGAAACCCC
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCACCTGGGCTTCATTCAATCTTCCCCTGGAA
GAGGAAACTGATTTGGGTACACTTGCCTTGACCGTTCAGTTAGAAGAACT
GTTGTTCCATTTGTGAGGGTCTCACTCTCTTAACTAGTCGCCTCCCAAAG
ACTGTACCTCCTTGCTTTCAGATCTGAGAGTGTGCATTTCAACAACAAAA
AAAAATTGTGCATAGAGCAGGGCATTGTGGTATGCACCTGCAGTCCCAAC
ACAGGGGAGGCTAATGCAGGGACATCATGAGTTCAGACATAGCCTTGCCC
AGGTAAGGAACCATTGTCTCAACAGAGACCAGGAATTTTGTGGACACACA
AACGTGCAGACTGTAGCATTACAGATATTGCTCTCGGGAAATGTACCAAA
CTCAGCAGTATCATCATGACTGTGAGCTACGTCATCTCAGGAACCTGTCG
GGAAAAACCTCTTAGTGACCTCAATTCAAAACTCTGCCCACCTCATCCTC
AGCGACACTCAAGGAATATGGAAGCACGTTGCTCAATCCTAAGCCACAAA
TTCACCCTCGGGCATTCTCCTGCTTCAGCACTCCTGGGACACTTGGNGTT
CCATTTTCTCCTTCTTGCATTAATTCAGACTTTTATGACTTTGCCGAAAC
CCCCACCTTTCTGGGTTTGTATTTACAATTCCCCCCTTTAGAGAAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_f20.g1 MSMg01no336_f20.g1 CHROMAT_FILE:
MSMg01no336_f20.g1 PHD_FILE: MSMg01no336_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:24 2005
         (525 letters)



>mm_chr18_56615991_56616915
          Length = 925

 Score =  942 bits (487), Expect = 0.0
 Identities = 511/525 (97%), Gaps = 10/525 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacctgggcttcattcaatcttcccctggaagaggaaactgatttgggtacacttgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacctgggcttcattcaatcttcccctggaagaggaaactgatttgggtacacttgcct 260

                                                                       
Query: 61  tgaccgttcagttagaagaactgttgttccatttgtgagggtctcactctcttaactagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaccgttcagttagaagaactgttgttccatttgtgagggtctcactctcttaactagt 320

                                                                       
Query: 121 cgcctcccaaagactgtacctccttgctttcagatctgagagtgtgcatttcaacaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcctcccaaagactgtacctccttgctttcagatctgagagtgtgcatttcaacaacaa 380

                                                                       
Query: 181 aaaaaaattgtgcatagagcagggcattgtggtatgcacctgcagtcccaacacagggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaaattgtgcatagagcagggcattgtggtatgcacctgcagtcccaacacagggga 440

                                                                       
Query: 241 ggctaatgcagggacatcatgagttcagacatagccttgcccaggtaaggaaccattgtc 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctaaggcagggacatcatgagttcagacatagccttgcccaggtaaggaaccattgtc 500

                                                                       
Query: 301 tcaacagagaccaggaattttgtggacacacaaacgtgcagactgtagcattacagatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaacagagaccaggaattttgtggacacacaaacgtgcagactgtagcattacagatat 560

                                                                       
Query: 361 tgctctcgggaaatgtaccaaactcagcagtatcatcatgactgtgagctacgtcatctc 420
           ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 561 tgctctcgggaaatgtaccaaactcagcagtgtcaccatgactgtgagctacgtcatctc 620

                                                                       
Query: 421 aggaacctgtcgggaaaaacctcttagtgacctcaattcaaaactctgcccacctcatcc 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 aggaacctgtcgggaaaaacctcttagtgacctcaattcagaactctgcccacctcatcc 680

                                                        
Query: 481 tcagcgacactcaaggaatatggaagcacgttgctcaatcctaag 525
           |||          ||||||||||||||||||||||||||||||||
Sbjct: 681 tca----------aggaatatggaagcacgttgctcaatcctaag 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)