BAC Information

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BAC

Clone NameMSMg01-337M12
Chromosome18 (Build37)
Map Location 84,900,147 - 85,063,301
singlet/doubletdoublet
Overlap geneB230399E16Rik, Cyb5
Upstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725
Downstream geneFbxo15, 1700034H14Rik, LOC100039765, LOC665382, LOC545269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337M12.T7 (MSMg01no337_m12.b1)MSMg01-337M12.TJ (MSMg01no337_m12.g1)
ACCAG452472AG452473
length729766
length of high quality
(start - end)		590 (47 - 636)444 (72 - 515)
definitionCHROMAT_FILE: MSMg01no337_m12.b1 PHD_FILE: MSMg01no337_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:15 2005CHROMAT_FILE: MSMg01no337_m12.g1 PHD_FILE: MSMg01no337_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,900,147 - 84,900,732)(85,062,860 - 85,063,301)
sequence
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGGTTTCCGGAAGGAAGCCCATGCAACTTTGGGCAGCCTTGTG
GTTCCTGGTGATTCCCGTTCCAGACCACTTCCTTGCCAGGTTGACAAAAG
GGTTTAAGAAAATGCATCTTCAACCCCAAGAGGAGAGGTCCAGTCCAGTG
AAGAAGCCCACAGGAGGCAGAGACAGGCAGGGGGCGGAGGAGACATCTCA
CTTCCTTGAGGGCAGCTATGAGGTCTAGTTAGTGCTGCTACAGGATCTGT
GGTCTTCTGAGGACAGTCTTTCTGGGCTGCAGATGGTGTGCTGTTCTTCC
AGGCCAGGCATTCTGTGTCCACAGAACCAGTGTGCAGAGAACAGTCATTG
CCAGCCGACATTACTCTTCTGGAGAGATTCTAGTCAGTTTCGTGTCTGCA
CATAAGACATTATGACTCCTGACGACATAGTCACTTGAGATGGGGGTTAT
AATCACTCGAGTCTTAGGGATGTGGCAGCGTGGAATGCTGTCCTCTGGGC
ATGACGTAGCCATTGTCCCCTTGAGCTCTCAGCAGCTGTGATTGCCTGCA
TGAGGGACATCAGGGCTATCTGTGATCCACAGTGGAGGGACAGAGGAGTT
CATGATACAGACACTTATCTCCAGGAGTTGTTTCTTCCCGAGGGTGCACT
AGTGACCTTCCTTACATTACCGAGCTTGC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAACAGAACAAAAAACACATGGGCATTT
CTATGCCAATCCTGACAGGTTTTCTCTCCCCACTGATGGCCAGAACCTCT
GCCTGATGAAACATGTATGTTGAGACTTAACCATTGACTCTAGTTTAGCC
TGGAGGGCATCGAATGAAAAACCAGTTGCACAGCACAAGCAGGAAAAAGC
AAGTTGATCTCATTTGTGTTGTAAATTAGAAAAGTACTCTTCAGCCTGTA
AAACTGACAACTGTCCTACCTACCAGGGCTGAATCTCCCTAGCCATCCCC
ATAAACAACTCATCTTAAACAACTCACTTTCAAGCCATGAAGGCTTGCCA
CGCAGGCCAGATGCACAAAACTGGATCCCAGTACCCGTGCAAAAGAGTGA
GTCATGGTGGCACGCACTTGAAAATCCACTCATGGGAAGGCAGAAGCAGG
AGGATTCCTAGGCCTGGCTGACCAGCCAGCCTAGCATAATTGGTGAACAC
AGTGGGGGCCGGAGAGGCATGTCAGCGTTTAAGAGCACTGGTTGCTTTTA
TTAAAGACTAAGGTTGGGTTCCCATAATGCTTATAGCAGCAGTCTGGGGA
CTCCCGGTCCCAAGAGCCCTAAAAGCCCCCTTCTTGTCCCCCTCGGGCAC
CAGGCAAAAAATTGGTGGACCAAATGTTTCTTCCTTCCAACAATTGTTTC
TTATCAATTTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_m12.b1 MSMg01no337_m12.b1 CHROMAT_FILE:
MSMg01no337_m12.b1 PHD_FILE: MSMg01no337_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:15 2005
         (590 letters)



>mm_chr18_84899943_84900932
          Length = 990

 Score = 1087 bits (562), Expect = 0.0
 Identities = 580/586 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggtttccggaaggaagcccatgcaactttgggcagccttgtggttcctggtg 64
           ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggcctctggaaggaagcccatgcaactttgggcagccttgtggttcctggtg 264

                                                                       
Query: 65  attcccgttccagaccacttccttgccaggttgacaaaagggtttaagaaaatgcatctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 attcccgttccagaccacttccttgccaggttgacaaaagggtttaagaaaatgcatctc 324

                                                                       
Query: 125 caaccccaagaggagaggtccagtccagtgaagaagcccacaggaggcagagacaggcag 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caacctcaagaggagaggtccagtccagtgaagaagcccacaggaggcagagacaggcag 384

                                                                       
Query: 185 ggggcggaggagacatctcacttccttgagggcagctatgaggtctagttagtgctgcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggggcggaggagacatctcacttccttgagggcagctatgaggtctagttagtgctgcta 444

                                                                       
Query: 245 caggatctgtggtcttctgaggacagtctttctgggctgcagatggtgtgctgttcttcc 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 caggatctgtggtcttctgaggacagtcttcctgggctgcagatggtgtgctgttcttcc 504

                                                                       
Query: 305 aggccaggcattctgtgtccacagaaccagtgtgcagagaacagtcattgccagccgaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggccaggcattctgtgtccacagaaccagtgtgcagagaacagtcattgccagccgaca 564

                                                                       
Query: 365 ttactcttctggagagattctagtcagtttcgtgtctgcacataagacattatgactcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttactcttctggagagattctagtcagtttcgtgtctgcacataagacattatgactcct 624

                                                                       
Query: 425 gacgacatagtcacttgagatgggggttataatcactcgagtcttagggatgtggcagcg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gacgacatagtcacttgagatgggggttataatcactcgagtcttagggatgtggcagcg 684

                                                                       
Query: 485 tggaatgctgtcctctgggcatgacgtagccattgtccccttgagctctcagcagctgtg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggaatgctgtcctctgggcatgacgtagccattgtccccttgagctctcagcagctgtg 744

                                                         
Query: 545 attgcctgcatgagggacatcagggctatctgtgatccacagtgga 590
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attgcctgcatgagggacatcagggctatctgtgatccacagtgga 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_m12.g1 MSMg01no337_m12.g1 CHROMAT_FILE:
MSMg01no337_m12.g1 PHD_FILE: MSMg01no337_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:16 2005
         (444 letters)



>mm_chr18_85062781_85063624
          Length = 844

 Score =  839 bits (434), Expect = 0.0
 Identities = 440/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacagaacaaaaaacacatgggcatttctatgccaatcctgacaggttttctctcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aaaacagaacaaaaaacacatgggcatttctatgccaatcctgacaggttttctctcccc 462

                                                                       
Query: 61  actgatggccagaacctctgcctgatgaaacatgtatgttgagacttaaccattgactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 actgatggccagaacctctgcctgatgaaacatgtatgttgagacttaaccattgactct 402

                                                                       
Query: 121 agtttagcctggagggcatcgaatgaaaaaccagttgcacagcacaagcaggaaaaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agtttagcctggagggcatcgaatgaaaaaccagttgcacagcacaagcaggaaaaagca 342

                                                                       
Query: 181 agttgatctcatttgtgttgtaaattagaaaagtactcttcagcctgtaaaactgacaac 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 341 agttgatctcatttgtgttgtaaattagaaaagcactcttcagcctgtaaaactgacaac 282

                                                                       
Query: 241 tgtcctacctaccagggctgaatctccctagccatccccataaacaactcatcttaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgtcctacctaccagggctgaatctccctagccatccccataaacaactcatcttaaaca 222

                                                                       
Query: 301 actcactttcaagccatgaaggcttgccacgcaggccagatgcacaaaactggatcccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 actcactttcaagccatgaaggcttgccacgcaggccagatgcacaaaactggatcccag 162

                                                                       
Query: 361 tacccgtgcaaaagagtgagtcatggtggcacgcacttgaaaatccactcatgggaaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 161 tacccgtgcaaaagagtgagtcatggtggcacgcacttgaaaatccactcacgggaaggc 102

                                 
Query: 421 agaagcaggaggattcctaggc 442
           ||||||||||||||||||||||
Sbjct: 101 agaagcaggaggattcctaggc 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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