Query= MSMg01no338_l12.b1 MSMg01no338_l12.b1 CHROMAT_FILE:
MSMg01no338_l12.b1 PHD_FILE: MSMg01no338_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:25 2005
(704 letters)
>mm_chr18_72341129_72342231
Length = 1103
Score = 1323 bits (684), Expect = 0.0
Identities = 696/700 (99%), Gaps = 1/700 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctgttttccttacatcaggttcaaaggacacattacttactaaataataatt 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgttttctttacatcaggttcaaaggacacattacttactaaataataatt 263
Query: 64 ccaaattcttaatggttttaataaatgaactttaaaatataattataagttagtaatccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaaattcttaatggttttaataaatgaactttaaaatataattataagttagtaatccc 323
Query: 124 atgccaaaattctgtcagtggtgtataaattagcatgaacatatgctaatgcataattca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgccaaaattctgtcagtggtgtataaattagcatgaacatatgctaatgcataattca 383
Query: 184 ccatttgcaacagggttttgttgaaaaattgatgaaaattcatcaaagagcctttctaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccatttgcaacagggttttgttgaaaaattgatgaaaattcatcaaagagcctttctaga 443
Query: 244 ttaagttacccaataaacaagtaactagaggcattcaaatgtagagtcaatatggcttct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaagttacccaataaacaagtaactagaggcattcaaatgtagagtcaatatggcttct 503
Query: 304 gaaattagcctttgtatgccttgcgaggctgttatgtgatgtagttaagatggcatttgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaaattagcctttgtatgccttgcgaggctgttatgtgatgtagttaagatggcatttgt 563
Query: 364 tacgcataagcatggggttctacatgtaagagctaatggggaatgaattgaaaggtcacc 423
||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 tacgcataagcattggcttctacatgtaagagctaatggggaatgaat-gaaaggtcacc 622
Query: 424 ttgctcaaattgtctacaaaccactgcagtaaatttgcttatctgtttattgaaaaaaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgctcaaattgtctacaaaccactgcagtaaatttgcttatctgtttattgaaaaaaat 682
Query: 484 atatatttttaccttgtcccattcaggagattctaaagtcaaaatatctattagaggatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atatatttttaccttgtcccattcaggagattctaaagtcaaaatatctattagaggatt 742
Query: 544 agaaatttacattttctttcaaacatcccagcagcttcttaaaatttacaagggtgagat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agaaatttacattttctttcaaacatcccagcagcttcttaaaatttacaagggtgagat 802
Query: 604 ttaagtgtctacaaaaaagaaactgaagctcttttatttgaggctacaaaaacacaccag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttaagtgtctacaaaaaagaaactgaagctcttttatttgaggctacaaaaacacaccag 862
Query: 664 aggaggatgagggactcaaacacccatactcctgatgctg 703
||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aggaggatgagggactcaaacacccatactcctgatgctg 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1103
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1093
Effective search space: 758542
Effective search space used: 758542
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no338_l12.g1 MSMg01no338_l12.g1 CHROMAT_FILE:
MSMg01no338_l12.g1 PHD_FILE: MSMg01no338_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:25 2005
(567 letters)
>mm_chr18_72499501_72500470
Length = 970
Score = 810 bits (419), Expect = 0.0
Identities = 445/455 (97%), Gaps = 3/455 (0%)
Strand = Plus / Minus
Query: 116 agggatgcaaatcgttgtcaattatgtgtaacctaggccatatttaaataaagctggttg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 agggatgcaaatcgttgtcaattatgtgtaacctaggccatatttaaataaagctggttg 911
Query: 176 cagtggcacacatctatctataatccaagaaattaagggctagaggttaaatattataag 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 cagtggcacacatctatctataatccaagaaattaagggctagaggttaaatattataag 851
Query: 236 tgtgagcacaccttggcctgcagagtaatttcaagatcagtctggactacaaagcaaaat 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tgtgagcacaccttggcctgcagagtaatttcaagatcagtctggactacaaagcaaaat 791
Query: 296 cctgtctcaaaaaccaacaatacaaaactaagctacgagaaaataaaatgcagtaaaata 355
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 790 cctgtctcaaaaaccaacaatacaaaactaagctacgagaaaataaaatgaagtaaaata 731
Query: 356 taaataagctaagtcattggtatgggaagagtgaaatttagcatgaagtatcttgcagat 415
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 taaataagctaaggcataggtatgggaagagtgaaatttagcatgaagtatcttgcagat 671
Query: 416 cattagagctgagatggataagcatactaatcaacaaatatactctactgtgataacatg 475
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 670 cattagagctcagatggataagcatactactcaacaaatatactctactgtgataacatg 611
Query: 476 ttaaagacagtgaaggcatccagagatcagaagaaaagaaataa---ataaaagaggttt 532
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 610 ttaaagacagtgaaggcatccagagatcagaagaaaagaaataataaaaaaaagaggttt 551
Query: 533 tatttacgaagaaaactgtaggtgatctgggagac 567
||||||| |||||||||||||||||||||||||||
Sbjct: 550 tatttaccaagaaaactgtaggtgatctgggagac 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 970
Length adjustment: 10
Effective length of query: 557
Effective length of database: 960
Effective search space: 534720
Effective search space used: 534720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
