BAC Information

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BAC

Clone NameMSMg01-339C16
Chromosome18 (Build37)
Map Location 89,933,047 - 89,933,572
singlet/doubletsinglet
Overlap geneDok6
Upstream geneLOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339C16.T7 (MSMg01no339_c16.b1)MSMg01-339C16.TJ (MSMg01no339_c16.g1)
ACCAG453521AG453522
length751728
length of high quality
(start - end)		530 (50 - 579)496 (57 - 552)
definitionCHROMAT_FILE: MSMg01no339_c16.b1 PHD_FILE: MSMg01no339_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:56 2005CHROMAT_FILE: MSMg01no339_c16.g1 PHD_FILE: MSMg01no339_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTTTGTTGTTGTACAAAATAAAAACACTGTGCCTACACTC
ACTGTAATAAACCATCATGTACTAAAGATTTTAACTGTGTTTTCCCATAT
TATGTCTTCCTCCAAAACAAAACTTGGTGACTCTAGTTGAGCCAATGTGC
TGAGTAATACAAAAGCATTTATTATACATAGTGCTGACTTAATTCAACCT
GGCTGTGTGATACACACACACAATTACACAAGTCGGTATACGTCATTTGA
TGAACTGTATGGACTGAGTAACCACTTGATTGTTTATTGTGTATAGTTGT
ACAAGCACACACTAAAATATACCAAGATACGTTTTTTTCGTACTTCCATG
TACAAATGTGAATCATTAACTGGGGTTTGAAGGATGCATAGAAATCCAAT
TCTAAATAAAGTACTATATGCTGGTGTATAATGTACTTAAGAAAGAGTTG
TCTATATGAATATGTTTTATATTGCTCATGAAATGCTTGGGACATAAAGT
GTTTCATATTTGGTACATACATAATGGTAAGATGACACATGCATAATGGT
AAGATCATCCCAAATTTAACCTGATCACTCATTTGCGGNTTATATATTAT
TTTTTAAGTTTATTTTAAATGTANGGGTGTAAAGCTGTGTGTATTTTACA
CCTGCATGAATGTTGCCCGCACCAAAGAAAAAAAGTGTTTTTCTCTTATT
C

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAACATGTTTCATTGAGGTTACTTGAAGGAATATGAGTGAGGTC
TTACTTAGCAGAGCAGAATGACTCAAAGATAACTGCATCACCAAAGCCCC
CTCACAAAAGCCTGAGACTGGGAGCACACTGCAGTCTACAGGCAGCTCAA
AATGTTGGAGAGTGTCCTCTCTAAGTGGCTCAATTAGCCTAGTTTCTAAG
CAGCTTGACTTGTTTCTGCTTTTTCAAGGCAGTGGGTCTAACATTATCTT
CTTTGCAGCTTGCTTGTCTGAAAGTCTTTATTGTTTACTCTTGGGAGGGA
AGCAGATAGTGAGTCTAGTCAGTTTCAGAAAATTTCTGAAGCAAGTTTGA
GCTGCTTAGCTTCCTGCTTATGAAGTTTCTGTATACGATGGATTGTTTCA
ATCTGAACCCTTGAAACATGCCCACCATGTAACAGTGAAAAATTCATGTA
AATGTTCCTGCTTGTGATAGACAAGTTTAGACATAGCAAGAAGCACTCAG
CATACAAATTTCAGATTGCAGAAGATGATCTTCACACATCAATAAATAAA
ACTTATTTTTGAATTTAATTTTAAATTAGTATTCACAATTCTTTGCCATT
GAGGAAAAATACCTAACACCCTGAAAATATTAATCCACGATTTATTACAT
TATCTTTCCATAAATAAACTGCTGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_c16.b1 MSMg01no339_c16.b1 CHROMAT_FILE:
MSMg01no339_c16.b1 PHD_FILE: MSMg01no339_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:56 2005
         (530 letters)



>mm_chr18_89932843_89933772
          Length = 930

 Score =  994 bits (514), Expect = 0.0
 Identities = 523/526 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtttgttgttgtacaaaataaaaacactgtgcctacactcactgtaataaacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtttgttgttgtacaaaataaaaacactgtgcctacactcactgtaataaacc 264

                                                                       
Query: 65  atcatgtactaaagattttaactgtgttttcccatattatgtcttcctccaaaacaaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcatgtactaaagattttaactgtgttttcccatattatgtcttcctccaaaacaaaac 324

                                                                       
Query: 125 ttggtgactctagttgagccaatgtgctgagtaatacaaaagcatttattatacatagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggtgactctagttgagccaatgtgctgagtaatacaaaagcatttattatacatagtg 384

                                                                       
Query: 185 ctgacttaattcaacctggctgtgtgatacacacacacaattacacaagtcggtatacgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 ctgacttaattcaacctggctgtgtgatacacacacacaattacacaagtcggtatatgt 444

                                                                       
Query: 245 catttgatgaactgtatggactgagtaaccacttgattgtttattgtgtatagttgtaca 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 catttgatgaactgtatggactgagcaaccacttgattgtttattgtgtatagttgtaca 504

                                                                       
Query: 305 agcacacactaaaatataccaagatacgtttttttcgtacttccatgtacaaatgtgaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcacacactaaaatataccaagatacgtttttttcgtacttccatgtacaaatgtgaat 564

                                                                       
Query: 365 cattaactggggtttgaaggatgcatagaaatccaattctaaataaagtactatatgctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 cattaactggggtttgaaggatgcatagaaatccaattctaaataaagtactatatgatg 624

                                                                       
Query: 425 gtgtataatgtacttaagaaagagttgtctatatgaatatgttttatattgctcatgaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgtataatgtacttaagaaagagttgtctatatgaatatgttttatattgctcatgaaa 684

                                                         
Query: 485 tgcttgggacataaagtgtttcatatttggtacatacataatggta 530
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcttgggacataaagtgtttcatatttggtacatacataatggta 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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