Query= MSMg01no339_d04.b1 MSMg01no339_d04.b1 CHROMAT_FILE:
MSMg01no339_d04.b1 PHD_FILE: MSMg01no339_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:59 2005
(615 letters)
>mm_chr18_62911094_62912112
Length = 1019
Score = 965 bits (499), Expect = 0.0
Identities = 526/537 (97%), Gaps = 4/537 (0%)
Strand = Plus / Minus
Query: 83 cgccttagtttatgacgccttatctttcccgggaagacacgaacaaacgcctccagatag 142
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1017 cgccttagtttatgacgccttatctttcccgggaagacacgaacaaatgcctccagatag 958
Query: 143 ggcaccaaccacagaccaaggaatcaagtctatgcagcacggtgagccaaagagtttaac 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ggcaccaaccacagaccaaggaatcaagtctatgcagcacggtgagccaaagagtttaac 898
Query: 203 tggggttactgacagcagtgtagcggagggattacttaaaggagcatgggcaaatcacaa 262
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tggggttactgacagcagcgtagcggagggattacttaaaggagcatgggcaaatcacaa 838
Query: 263 gctgctaaataaccgaagaagtcttccccatcagcaactgttaaccttttgtttgccctt 322
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 837 gctgctaaataaccgaagaagtcttccccaccagcaaccgttaaccttttgtttgccctt 778
Query: 323 ggagtggagtggggccttgtacagtgagtgcgtaatttgtgtgccacctttgcactacct 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ggagtggagtggggccttgtacagtgagtgcgtaatttgtgtgccacctttgcactacct 718
Query: 383 tggagccttgtgaaccccttgtgtgctgccttgtatgccctactgcctcatgaaccgccc 442
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct: 717 tggagccttgtgaaccccttgtgtgctgccttgtgtgccctactgcctcatgatcccccc 658
Query: 443 ttaacctttatgaagggatactaatgggctcaattttgtgtgtg----gggggtctcatg 498
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 657 ttaacctttatgaagggatactaatgggctcaattttgtgtgtgtggggggggtctcatg 598
Query: 499 gggagaaatcacacgtgtttagccatgtgatgcttatgagacagaatcccacagcaggac 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gggagaaatcacacgtgtttagccatgtgatgcttatgagacagaatcccacagcaggac 538
Query: 559 gaagttcacagcatgcttgctttggaccatgcaatgtcaccatgctacagaaccctg 615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gaagttcacagcatgcttgctttggaccatgcaatgtcaccatgctacagaaccctg 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1019
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1009
Effective search space: 610445
Effective search space used: 610445
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_d04.g1 MSMg01no339_d04.g1 CHROMAT_FILE:
MSMg01no339_d04.g1 PHD_FILE: MSMg01no339_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:59 2005
(563 letters)
>mm_chr18_62878840_62879802
Length = 963
Score = 1027 bits (531), Expect = 0.0
Identities = 555/563 (98%)
Strand = Plus / Plus
Query: 1 aggtgagatgacatgtaggagaagcaactgcaagtaagtagtggtgaacaagagaaagga 60
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgagatgacaggcaagagaagcaactgcaagtaagtagtggtgaacaagagaaagga 260
Query: 61 aagagagagacagagacagagacagggagacagagagaaagaggtaatcagagaaagcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagagagacagagacagagacagggagacagagagaaagaggtaatcagagaaagcgg 320
Query: 121 gacatagaataccaagtactagagactggggttcaaggaggggctggctaaagagaggct 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacatagaataccaagtactagaaactggggttcaaggaggggctggctaaagagaggct 380
Query: 181 ggctttgattggtacatgaaatatatgcatgtattaagatgtcatgccgaacctcattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctttgattggtacatgaaatatatgcatgtattaagatgtcatgccgaacctcattaa 440
Query: 241 tatgtgaaatttactcatggcaatgaaaaatgacaccaacatcaagctgcagaaatttag 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatgaaatttactcatggcaatgaaaaatgacaccaacatcaagctgcagaaatttag 500
Query: 301 aattgaacaggacaagataagggctctacatctatcagcgcaggctacattatgctgtgt 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 aattgaacaggacaagataagggctctgcatctatcagcgcaggctacattatgctgtgt 560
Query: 361 tgacaatgagcccgctgtggttcacaactacctaggacatccagttctagtcttaaaggc 420
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 561 tgacaatgagcccgctgtggttcacaactacctagggcatccagttctagtcttaaagac 620
Query: 421 cttcttctggcctccacagacacattcaccaaaacaaaaattgggggagggagtctagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcttctggcctccacagacacattcaccaaaacaaaaattgggggagggagtctagtg 680
Query: 481 cttgtgaccaaatctctcagtaagaactgacttgcattacgctctgcccccacccatcac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgtgaccaaatctctcagtaagaactgacttgcattacgctctgcccccacccatcac 740
Query: 541 cctccacacacaaactcattaaa 563
|||||||||||||||||||||||
Sbjct: 741 cctccacacacaaactcattaaa 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
