Query= MSMg01no339_h18.b1 MSMg01no339_h18.b1 CHROMAT_FILE:
MSMg01no339_h18.b1 PHD_FILE: MSMg01no339_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:19 2005
(499 letters)
>mm_chr18_60964342_60965240
Length = 899
Score = 785 bits (406), Expect = 0.0
Identities = 457/482 (94%), Gaps = 15/482 (3%)
Strand = Plus / Minus
Query: 24 aaaaaaaaaggcacaggcagagggagataataaaaatgcccaactcctagctacagtaac 83
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 693 aaaaaaaaaggcacaggcagagggagataacaaaaatgcccaactcctagctacagtaac 634
Query: 84 tgaaagaattaagatagaatctgtagtttgtttatcattaccgtgatgatcaatgtcgtc 143
|| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 633 tgtaggaattaagatagaatctgtagtttgtttatcattatcgtgatgatcaatgtcgtc 574
Query: 144 tgaggaccggtggaaggaacccaatagatgaacagttcttatagccattgctgttaagca 203
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgaggaccggtagaaggaacccaatagatgaacagttcttatagccattgctgttaagca 514
Query: 204 gtgggacccaaaaaagaggctgtggtttttctgtggtcacccatgac-----ttttttaa 258
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 513 gtgggacccaaaaaagaggctgtggtttttctgtggtcacccatgacagcag-----taa 459
Query: 259 aagttacttcagaattccccattgctctaagaatccatatctggttaccttcttgctaga 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aagttacttcagaattccccattgctctaagaatccatatctggttaccttcttgctaga 399
Query: 319 atgccattcgtggtcaatctcccagagtctctttcaaaacccctttctgcctagagactg 378
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 398 atgccattcgtggtcaatctcccagagtctctttcaaaacctctttctgcctggagactg 339
Query: 379 ctgacgtcacatctggttttagttccccataggcaagcaaataggcagcttgggggttgg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctgacgtcacatctggttttagttccccataggcaagcaaataggcagcttgggggttgg 279
Query: 439 ggaaacaaggcaagaaggcaagtgaattctaaccctgtttggtttt-----ggggggggg 493
|| ||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 278 gggaacaaggcaagaaggcaagcaaattctaaccctgtttggtttttttttggggggggg 219
Query: 494 gg 495
||
Sbjct: 218 gg 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_h18.g1 MSMg01no339_h18.g1 CHROMAT_FILE:
MSMg01no339_h18.g1 PHD_FILE: MSMg01no339_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:19 2005
(532 letters)
>mm_chr18_60825305_60826236
Length = 932
Score = 1013 bits (524), Expect = 0.0
Identities = 530/532 (99%)
Strand = Plus / Plus
Query: 1 caaaccagggctccaaagtaagactttccctcaaaacaaacaaacaaaagaaaacaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaccagggctccaaagtaagactttccctcaaaacaaacaaacaaaagaaaacaaaca 260
Query: 61 gaatgatggagatggctcactagtgaagagagagatggcccaatcactagtgaagagggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgatggagatggctcactagtgaagagagagatggcccaatcactagtgaagagggt 320
Query: 121 gatgccccagtcagcaaagatggaaatagccagtcagtgaaatgctgaccttgtttgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgccccagtcagcaaagatggaaatagccagtcagtgaaatgctgaccttgtttgttt 380
Query: 181 tggtttggttttggttttcgagacagggattctctgtgtagccctggctgtccaggagct 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tggtttggttttggttttcgagacagagattctctgtgtagccctggctgtccaggagct 440
Query: 241 cattccatagaccaggctggcctcgaactcacagggatctgcccaggcttgaatgaaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattccatagaccaggctggcctcgaactcacagggatctgcccaggcttgaatgaaagg 500
Query: 301 cacagcacacaccaccatcacccacaagtgctggccttaaaaccatgaagacctaattcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagcacacaccaccatcacccacaagtgctggccttaaaaccatgaagacctaattcc 560
Query: 361 ccagaacccatgggaaagccaggtgttgtgctgtttgcttggaatcccagcagtggcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagaacccatgggaaagccaggtgttgtgctgtttgcttggaatcccagcagtggcaag 620
Query: 421 atgggagacaggcaggtcctcagagcttgctggtcagctacttgccctgggggctcctgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgggagacaggcaggtcctcagagcttgctggtcagctacttgccctgggggctcctgg 680
Query: 481 aaaggacctgcttctgtccccagcacccacatggtgggctcataatcatcca 532
||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 aaaggacctgcttctgtccccagcacccacatggtggcctcataatcatcca 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
