BAC Information

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BAC

Clone NameMSMg01-339K12
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339K12.T7 (MSMg01no339_k12.b1)MSMg01-339K12.TJ (MSMg01no339_k12.g1)
ACCAG453887AG453888
length741731
length of high quality
(start - end)
452 (68 - 519)475 (58 - 532)
definitionCHROMAT_FILE: MSMg01no339_k12.b1 PHD_FILE: MSMg01no339_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:32 2005CHROMAT_FILE: MSMg01no339_k12.g1 PHD_FILE: MSMg01no339_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACAGGTAAATCATCACTCAGGGACTTCAGGCAGAAAACTAGCC
AGTCAGCCTCTGGATAGACAAGGCTCAACAGTTCAGAGAACCAGGCCATC
GCAAATAGTTCACAGACCTGCAAGGAAGACATGCAGATCCCTGCCCCCCA
CCCTACCCCTCCCCCAGCCCCACCCAAACATAGGGAGAAAAGGCAGTGTG
GGGGAGGGGGAGGTGCTGTGAGAGAATTTAGATAGCTCGAAGAAATAAAT
AGCTGGAGACTTCATTCATTTACTTATTTTATTGAGTATATGGTGAAAGA
GGGAAAATGGCTCGAAAAGGAGGGAGGGCAGACTGTCTTCCCATGCTGGG
ATCATTCATGCCTTAAGAAGGAATGCAGGAGGCTGGAGAGATGGCTCAGC
GGTTTAGAGCCCTGACTGCTCTTCTGAAGATCCTGAGTTCAAATCCCAGC
AACCAAATGGTGGGTGGTTCACAACCACCCACAATGAGATCTGGTGCCCT
CGTTTAGCGTGTCCCACTCTGCTATTGCGTTCTTACCTATAATAAATTAT
TTTGACGCTTAACGTTTAGTAATTTTTTTCCCCCTATTTTTCCTTCCTTC
CCTTTCTCTCCTTATTTACTCTTTCTTCTTTTTTCTCCCATTATATGCTT
CCTTATCTCCCCCTTCTCCCCTCTTTTTTCTCCTCTTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTGAACTCACTGTCCTTTCAGGTCCACATTTGCTCTGGCTCT
GGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAAT
GGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTCA
CTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAATTTG
TAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATGT
TTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCC
TGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTAATACTTCTCCTGTGATTGCCGTAACTTGCAATCTAGTGG
GCTTATGTTTGATTCCTGTAATCTTTTTTTCTAATTCTTTTTCCTTTTTA
TATTTTATTTTATTTTATTTTATTTTATTTTATTTTAATTTATTTTATTT
TATTTTATTTTATTTAATTTTAANNNAATTNANNNNNNNNNNNNTTNTNT
NNTTTTTTTTTTTTTNCCCTTTTATTTTTTTTNTTATTTTATTTTTTTNT
TTTTTTTATTTTTAAATTTTTTTATTATTTTTTTTTTATATTTTTTATTT
TATTTTTATATTTAATTTTATTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_k12.g1 MSMg01no339_k12.g1 CHROMAT_FILE:
MSMg01no339_k12.g1 PHD_FILE: MSMg01no339_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:32 2005
         (475 letters)



>mm_chr18_40467476_40468349
          Length = 874

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 874
Length adjustment: 10
Effective length of query: 465
Effective length of database: 864
Effective search space:   401760
Effective search space used:   401760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)