BAC Information

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BAC

Clone NameMSMg01-339L19
Chromosome18 (Build37)
Map Location 42,578,638 - 42,579,090
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3
Downstream geneLOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339L19.T7 (MSMg01no339_l19.b1)MSMg01-339L19.TJ (MSMg01no339_l19.g1)
ACCAG453948AG453949
length744746
length of high quality
(start - end)		484 (72 - 555)335 (58 - 392)
definitionCHROMAT_FILE: MSMg01no339_l19.b1 PHD_FILE: MSMg01no339_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:39 2005CHROMAT_FILE: MSMg01no339_l19.g1 PHD_FILE: MSMg01no339_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATATATTCCTCAGACAGACCTTACTCAAACGCCACCTTGTG
TGGGACACTTCCAGTGCCCTCTTGGTAGAGTCAGTCTATAGACCACCACC
TCCCCACATACACATACACACAGTACTGGGCACGGAAGGTTACCACAGTG
CTTACCAGAGTGTCACATTGTTACCCTCCGTTCCCTGTATCCTCAGAGGG
AATGGCAAGCACTGAGTATCTGTTAGAATGATTTGCAAGGTTCTGTGCTG
AACACTGTTGGGAGAACAATACTGTAAAAGGCTGGCTCCCATCCCTCCAG
GAACTTAGAGAGCTTTTTGGAACTCTGGCTCTCCAAATGAAGATTCATAT
TAATAACTTCTGTAGCTGTCATATGCAACTGGATATTTGGTGTACACAGA
AGTAGGAGAATGCATTTCCACTCTAGAGAGGAAAGATTTATTTATCGAGC
ATCCCCTGTTTCCGTGTGTGTGTGGGAGGGGGCAGGTAGGGGAGTGGGGG
TGAATCTAGGCTACTATTTATATCATCTCTTAACCCCTTTGTGGCTCTTA
ACCCCACATTGTTGGGGTTCTATACCCGCCTCCATGGTGTTATTACCTCC
TCTTCCGCGCGCTCTGCTTGTTTTCTCCTCGCCCCCCCTTTTTCTCCCTT
CCCACCCTTTTTTATTTTTTGTTACGCACCTCCCCTACCTCTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGGGCCACCAGCCCAGGGTGGCCCCATCCACAATGGACTGGGC
TTTCCCCCCATTAATCACTAATTTTAAGAAAATGCTGGCCGGGCAGTGGT
GGTGTCCCAGCACTTGGGAGGCAGAGGCAAGTGGGTCTCTAAGCTGGAGG
CCAGCCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGGGCTACATGGAGA
AACCCTGTCTTAATCTAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGAGAGAGAAAGAAAGAAAGGAAGGAAGGAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGANGAANNAA
AGAGAGAGAGAGANNGGAGGNNGGGGAAGAAAGAGAAAAGGAAAAAGGNA
AAGGAGAGAAAAAAGAGAAAGGAAAAAAAANGAGGAGAAGAAAAAGGGAA
GGAAGGAAGAGGGAAAAGAGAAAAGAGAGAAAAAAGAAGGAGAAGAAGGG
AAAANAAANAAAGAAGAGAAGAGAAAAGGAGAAAGAAGAGGAGAAGAAAG
GAAGANAGAAAAAAAAAAAAGAGAAGGGGGNAAAAAGAAGAGGAGGAGGA
AAGAAAGAAAAAGAGGAAAAAGAAGGGAAAGGGAAAAAANGAGGAAGAAG
AGGGAGAGAAGAAAAAAAAGGAAGAACAAAAAAGAAGAAAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_l19.b1 MSMg01no339_l19.b1 CHROMAT_FILE:
MSMg01no339_l19.b1 PHD_FILE: MSMg01no339_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:39 2005
         (484 letters)



>mm_chr18_42578438_42579321
          Length = 884

 Score =  830 bits (429), Expect = 0.0
 Identities = 447/453 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacagaccttactcaaacgccaccttgtgtgggacacttccagtgccctcttggtagagt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gacagaccttactcaaacgccaccttgtatgggacacttccagtgccctcttggtagagt 260

                                                                       
Query: 61  cagtctatagaccaccacctccccacatacacatacacacagtactgggcacggaaggtt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtctgtagaccaccacctccccacatacacatacacacagtactgggcacggaaggtt 320

                                                                       
Query: 121 accacagtgcttaccagagtgtcacattgttaccctccgttccctgtatcctcagaggga 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 accacagtgcttaccagagtgtcacactgttaccctccgttccctgtatcctcagaggga 380

                                                                       
Query: 181 atggcaagcactgagtatctgttagaatgatttgcaaggttctgtgctgaacactgttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggcaagcactgagtatctgttagaatgatttgcaaggttctgtgctgaacactgttgg 440

                                                                       
Query: 241 gagaacaatactgtaaaaggctggctcccatccctccaggaacttagagagctttttgga 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaagaatactgtaaaaggctggctcccatccctccaggaacttagagagctttttgga 500

                                                                       
Query: 301 actctggctctccaaatgaagattcatattaataacttctgtagctgtcatatgcaactg 360
           |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 actctggctctccaaacgaagattcatattaataacttctgtaactgtcatatgcaactg 560

                                                                       
Query: 361 gatatttggtgtacacagaagtaggagaatgcatttccactctagagaggaaagatttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatatttggtgtacacagaagtaggagaatgcatttccactctagagaggaaagatttat 620

                                            
Query: 421 ttatcgagcatcccctgtttccgtgtgtgtgtg 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 ttatcgagcatcccctgtttccgtgtgtgtgtg 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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