CGGGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGC
AAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCC
ACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCA
ACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATC
AAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGA
TGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCC
TAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCA
AACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGA
AATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATC
TCGGCGTGACTCTGACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTC
AAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCT
CCCATGCTCATGGATTGGCAGGATCAATATTGTAAAAATGGCTATCTTGC
CAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAA
TTCTTCAATGAATTAGAAGGAGNCATTTGCAAATTCAT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXGATCATACAGCTCACTATTAACTGATTCACTA
TGGGCAAATTGATAGCTTATTCGTGAGGAAGAGTGAGTTTTCTTTAATGG
TTGGGTCCTGTAGAGCCAGAAGAATTACCTCTAGATGAGAAGGTATTGAG
AATTGATAGACTGTTTGAAAGGAGGAGACTATTGTCTTAAGGTTGTGGTA
TCTTGTAGGTAAACCATCAGCCATATACCCAGGATTATATGGGCATGGAA
CTCTATGTGTTTAAAAATAAACGAGGGCACAAATTCATGAGAGTAAAGGA
AGTGAGGAAGGTGAACATGATTAAAACATGTTGTTGAAGGTTCTCAAACA
ATTAATAAAAAGAAGAAGAAATAAATAAGCAAGTAAATGTTCAGAGAACC
GCTTTAAAATGAATTACAGGGACAGGAGAGATTGCTCAGTGGTTAAGAGC
ATTCACAACTCTTCCAGTGGTACTGACTTCAATTCTGAGCAACCACATGG
TCTCTCACAACCATCTGTAATGGGATCTGATACTCTCTTCTGGTGTGTCT
GAAAATAGAGACAGTGTACTCACATACATAAGAAAAATAAGTAAATCTCT
TTTTAAAAAGTAATTAATTACATAAGCAATCCACATGAGAAATGCCTAGG
AATCATATTTTAAAGATATTCTACTACAGTATN

Query= MSMg01no339_m04.g1 MSMg01no339_m04.g1 CHROMAT_FILE:
MSMg01no339_m04.g1 PHD_FILE: MSMg01no339_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:40 2005
         (526 letters)



>mm_chr18_88566555_88567480
          Length = 926

 Score = 1002 bits (518), Expect = 0.0
 Identities = 524/526 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatcatacagctcactattaactgattcactatgggcaaattgatagcttattcgtgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gatcatacagctcactattaactgattcactatgggcaaattgatagcttattcgtgagg 633

                                                                       
Query: 61  aagagtgagttttctttaatggttgggtcctgtagagccagaagaattacctctagatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aagagtgagttttctttaatggttgggtcctgtagagccagaagaattacctctagatga 573

                                                                       
Query: 121 gaaggtattgagaattgatagactgtttgaaaggaggagactattgtcttaaggttgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaaggtattgagaattgatagactgtttgaaaggaggagactattgtcttaaggttgtgg 513

                                                                       
Query: 181 tatcttgtaggtaaaccatcagccatatacccaggattatatgggcatggaactctatgt 240
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 512 tatcttgtaggtaaaccatcagccatatacccaagagtatatgggcatggaactctatgt 453

                                                                       
Query: 241 gtttaaaaataaacgagggcacaaattcatgagagtaaaggaagtgaggaaggtgaacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtttaaaaataaacgagggcacaaattcatgagagtaaaggaagtgaggaaggtgaacat 393

                                                                       
Query: 301 gattaaaacatgttgttgaaggttctcaaacaattaataaaaagaagaagaaataaataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gattaaaacatgttgttgaaggttctcaaacaattaataaaaagaagaagaaataaataa 333

                                                                       
Query: 361 gcaagtaaatgttcagagaaccgctttaaaatgaattacagggacaggagagattgctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcaagtaaatgttcagagaaccgctttaaaatgaattacagggacaggagagattgctca 273

                                                                       
Query: 421 gtggttaagagcattcacaactcttccagtggtactgacttcaattctgagcaaccacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtggttaagagcattcacaactcttccagtggtactgacttcaattctgagcaaccacat 213

                                                         
Query: 481 ggtctctcacaaccatctgtaatgggatctgatactctcttctggt 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ggtctctcacaaccatctgtaatgggatctgatactctcttctggt 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)