Query= MSMg01no340_h13.b1 MSMg01no340_h13.b1 CHROMAT_FILE:
MSMg01no340_h13.b1 PHD_FILE: MSMg01no340_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:29 2005
(612 letters)
>mm_chr18_39094169_39095180
Length = 1012
Score = 801 bits (414), Expect = 0.0
Identities = 429/434 (98%), Gaps = 1/434 (0%)
Strand = Plus / Minus
Query: 1 atagctctaataatttaaaagaagttaagtttcaggaactttcactagcacaaaacctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atagctctaataatttaaaagaagttaagtttcaggaactttcactagcacaaaacctaa 375
Query: 61 agggtgttctttgtggaaaagccaaatggctgaagatgacagaattaaagaaatgaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agggtgttctttgtggaaaagccaaatggctgaagatgacagaattaaagaaatgaagta 315
Query: 121 cagagatacaatttaacaatgtctgctggggtctaagaaacgtcgaaatatcatctaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cagagatacaatttaacaatgtctgctggggtctaagaaacgtcgaaatatcatctaaaa 255
Query: 181 ctaggagagcagaggcaggaggattgccttatacatcaaaaccctgtcaaaaacaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctaggagagcagaggcaggaggattgccttatacatcaaaaccctgtcaaaaacaaaaaa 195
Query: 241 taaaaaataaataaataataagatggggatttaaaaacgggagtcttatgcttatgcctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 taaaaaataaataaataataagatggggatttaaaaacgggagtcttatgcttatgcctg 135
Query: 301 taatctagagtatgctac-ccagaaactaaggcaggacgatcttaagtttgactccagct 359
| |||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||
Sbjct: 134 tgatctagagtatgctactccagaaactgaggcaggatgaccttaagtttgactccagct 75
Query: 360 tgaacaccttagaaagactttatcgcaaagtaaattcaatcggctaaggatgtagctcag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 tgaacaccttagaaagactttatcgcaaagtaaattcaatcggctaaggatgtagctcag 15
Query: 420 tggtagagcacttg 433
||||||||||||||
Sbjct: 14 tggtagagcacttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_h13.g1 MSMg01no340_h13.g1 CHROMAT_FILE:
MSMg01no340_h13.g1 PHD_FILE: MSMg01no340_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:29 2005
(531 letters)
>mm_chr18_38898169_38899103
Length = 935
Score = 953 bits (493), Expect = 0.0
Identities = 522/535 (97%), Gaps = 7/535 (1%)
Strand = Plus / Plus
Query: 1 caggacagccagggctatacagagaaaccctgtctcgaaaaaacaaaaaaaaaaaaaaaa 60
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 204 caggacagccagggctatacagagaaaccctgtcttgaaaaaccaaaaaaaaaaaaaaaa 263
Query: 61 aaaaaagggaaaggagaggaaccctgagtcactccttttgcctccaccctcccccaacag 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaa---gggaaaggagaggaaccctgagtcactccttttgcctccaccctcccccaacag 320
Query: 121 tcatgggtccattgatagccagcagacccctaaacaggcttctttgcacacaacttcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgggtccattgatagccagcagacccctaaacaggcttctttgcacacaacttcttt 380
Query: 181 gtcccttcccctctgacagccttgcaggtctgaatacttcttgcttgtatacacagtgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcccttcccctctgacagccttgcaggtctgaatacttcttgcttgtatacacagtgta 440
Query: 241 tctacccatctgtgcctcctttcccatcttctcttggacttccttctcttcatctctgtt 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccacccatctgtgcctcctttcccatcttctcttggacttccttctcttcatctctgtt 500
Query: 301 ccgtttctccaggctccttccactgctggcttctttttccaggatagcgtgctgtcacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgtttctccaggctccttccactgctggcttctttttccaggatagcgtgctgtcacta 560
Query: 361 tccctttgtggggcccttcttttctctctgaccctgatggtctatgc----tgtgttcac 416
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 561 tccctttgtggggcccttcttttctctctgaccctgatggtttatgcatgctgtgttcac 620
Query: 417 ttacctgtcatcctgtattcagtccactgccctctggctcattccttaaccctgccatga 476
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacctgtcatcctgtattcagcccactgccctctggctcattccttaaccctgccatga 680
Query: 477 aacaggacaccgtgaagcatcacagcccaactccccagtgcattctctctgtctt 531
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacaggacaccatgaagcatcacagcccaactccccagtgcattctctctgtctt 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 935
Length adjustment: 10
Effective length of query: 521
Effective length of database: 925
Effective search space: 481925
Effective search space used: 481925
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
