BAC Information

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BAC

Clone NameMSMg01-341J10
Chromosome18 (Build37)
Map Location 88,756,377 - 88,756,478
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341J10.T7 (MSMg01no341_j10.b1)MSMg01-341J10.TJ (MSMg01no341_j10.g1)
ACCAG455347AG455348
length769762
length of high quality
(start - end)
102 (132 - 233)371 (73 - 443)
definitionCHROMAT_FILE: MSMg01no341_j10.b1 PHD_FILE: MSMg01no341_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:53 2005CHROMAT_FILE: MSMg01no341_j10.g1 PHD_FILE: MSMg01no341_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTATTGTGTCCGCTATACGAATCACTTTTCGTAGAGGATCCGCGGAAT
TCACTGTTTCCTAATAATGAACATCTCACATAAGAGATGAGAAATTCACT
TTCTTGAGAGTCTCAGTACAATAGCGTTTTAAGAAGGCCAGAGTAATGCA
AATTACTATGTATAGATTTTTATTTTGGTAGAGAGTTGTTAGAAAATTGA
AATATAACCCCCTCCATCCTTTACAATGGTTTATAGCACACTGGCCTCAC
CAGTGTGTGGACCTTATCCTAGAAAAGCTTCTGGGCTTATTTCAGTAGAT
CATCTGGCAACACTTTTTTCTAGTCTCATTATTCCCATATTTTTGACTAT
CAATCAAAGTCTTTGGTCTTTGGGTACAGAAATTTATCTTATTTCCTGTT
GGCTTAAGTCTCTTGTCATTTTTGATTCCCAATATAATATTGCCCATTTC
TCGAGTACTATTTAGCTGCACTACAACTTACGTTCTATCTATTCATAACA
CGTGACATTTCGTTTTTCCGCGACGCTTTTTCGCCCACTCTTCTTTTCTC
CACCCTTCTATCACTTACTTATTTTTCCTACCTGTATTTCCCTTGCCTCT
TCCCCTTTCCTCCCCTTTTTCCCCCGTCTTCTACCCTACTTTTTTTTCCC
CCGTATATTCTGTTTTTTATTTGCCTTCCTTTCCCCCCTTTTTTTCTTTT
TTTCCCTTTATTTTTCCCGCTTTTTTTTTTTCTTTTCCGCTTCCTTTCTT
GTCTCCTTTCTTTTCATCC
TGCCATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCC
GTCTGGCGGTTCCTCAGAATATTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGCGCATATATCCAGAAGATGCCCCAACTGGCAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAATGAACCTAGATGCCCCTCAATATAGGAACGGATACATAAAATGTG
GTACATCTACACTACGGAGTATTATTTTTTCATCAAAAACAATGTATTTA
CGACACTTCCATCCAAATGTGTGCGACCCGTAGGTGCTTTTTCCTGTTAT
TAGGTTATTTTTTTCTCCACGTACTTTTTCACTTTTTTTCTCCCCTTATT
TTTCTCCTCCTAACCGCCCTTCCCACAGTTACCTTCTCATTTTTGTACCC
TTTTTCCTCACTTTCCTATTTATCCCTTTTCCACTACCCTTTTCCCCTCT
TTTCCCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_j10.b1 MSMg01no341_j10.b1 CHROMAT_FILE:
MSMg01no341_j10.b1 PHD_FILE: MSMg01no341_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:53 2005
         (102 letters)



>mm_chr18_88756177_88756678
          Length = 502

 Score =  174 bits (90), Expect = 1e-48
 Identities = 99/102 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaggccagagtaatgcaaattactatgtatagatttttattttggtagagagttgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 302 agaaggccagagtaatgcaaattactatgtatagatttttatttttgtagagaggtgtta 243

                                                     
Query: 61  gaaaattgaaatataaccccctccatcctttacaatggttta 102
           |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 242 gaaaattgaaatataaacccctccatcctttacaatggttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)