BAC Information

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BAC

Clone NameMSMg01-341L22
Chromosome18 (Build37)
Map Location 59,099,239 - 59,099,649
singlet/doubletsinglet
Overlap geneAdamts19
Upstream geneSlc12a2, Fbn2, Slc27a6, Isoc1
Downstream geneA730017C20Rik, 4833446K15Rik, LOC667549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341L22.T7 (MSMg01no341_l22.b1)MSMg01-341L22.TJ (MSMg01no341_l22.g1)
ACCAG455464AG455465
length780791
length of high quality
(start - end)		414 (40 - 453)379 (70 - 448)
definitionCHROMAT_FILE: MSMg01no341_l22.b1 PHD_FILE: MSMg01no341_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:04 2005CHROMAT_FILE: MSMg01no341_l22.g1 PHD_FILE: MSMg01no341_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTACATAATGGTGCTTTGAAATGGGTCTGCATTACATCTATCTTTAATAA
CAGCTCTGTTAAACCCTTTCCTCTCCTAACCCCTAGACCTTATTATAATA
AGAAACATATGAGCTTTTGAAAGGAACCGAAAAAGGTGGCCTTTGAAACA
AAATAACACAATTCTTTTAAATGGCAACAGAAGTTCTCTGTAACAGTCAA
GGCAAAGACATCTCCTTGACCTTCTAAATTAAGTGCAATGAGTTTCACAT
TTACCAAGTACTGACTGAAGTTTCTGACTCTGCGCATCAGTAGAGTAGGA
GCAGAAGATCGTTTTTAATTGTTAAACCACAATCTGGTCTATGAGAAGTT
GCAAATATCAATGAAATTCATAAAGATGATCACTGTGTTTATAAGCTTTA
AATTTCCCACGATAAACCATTATGAACACATGATTGGTAAATGGGAAAGA
GGCAGAAAATTCACCCTTAATCTCAGCACATTGTAGAGTTGCTAACAGTG
GATTACCATATACGAAGACTTTTTTTTCTGAATATGGGGGAGGGCGTTTT
ACCTATAACTGGAAGAGACCTCTGGGGAAAAAAAAAAATTCCCCTGAGAA
TTCCCGCCCCTCAAAGGCTTTTAAATTAAACAAAAATGGCTTCCAGCCCC
AATAAAAAAATTCCCCATTTTTTTCCCCCCCGGAACCCAAAGTTTTCTAC
CCTCGGGGGTAAATTTCTCACTCCCGCCCC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGGATACTGGAGGAGAACACACAAGTAGCA
CTTCACTAAACAAGCACAATGCCTAACTACATTCTACATATGTGTACATG
AGGATAATTACAGCTCTTGCCCCTCATCAAAGCAACTTCTCTTTGCAGCA
GATGGAGATCATTACAGGAAACCACAATCCATCAAAATCCAGAGCTGGGA
AGCCCAGTACCCATGGATAGGTATACAACAGGAACCCTCCACCCAAGGAT
CAGGGATCATGGGGGAAGAGGGGACAGAAAGGTTGTAAGAGCAAGAGGAA
AGGCATATGAGTATCCAAGGAATGTCAAAAGCTATATCCATAAAGTGCAC
CAACACAACTGTCTGAACATGAACTGGGCAAGGATGATACAGTAGACAAC
CCAGAGTATATGGGAGTAGCCCATGAGGGATTACTATATAAAATATACAT
AATCCTATATAAAAAACTAGAGGCAACTAAAAAATTGCTCACAATAAGAG
AAATAGTCTTGTCTAAGGATGAAAACCCCACTGTTTGTCCCAAACAAGGG
GGGAACCCCTAAAAAATTAATTCAGTTATATTTTTAACTCGGGGTTATGT
GCTTGAAAAATTATTAATATGGTAGTTCCCCCCTATCCCCTCTTCTTTCC
CGCTTTACAAAGTAAAACATCCCCTTTTTTTTCCCTATATTATTCTTACT
TTTAAAACCCTTTCCTTCCCTCAACCCTCTCTCTCTATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_l22.b1 MSMg01no341_l22.b1 CHROMAT_FILE:
MSMg01no341_l22.b1 PHD_FILE: MSMg01no341_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:04 2005
         (414 letters)



>mm_chr18_59099035_59099849
          Length = 815

 Score =  741 bits (383), Expect = 0.0
 Identities = 404/411 (98%), Gaps = 1/411 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaca-taatggtgctttgaaatgggtctgcattacatctatctttaataaca 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttacaataatggtgctttgaaatgggtctgcattacatctatctttaataaca 264

                                                                       
Query: 64  gctctgttaaaccctttcctctcctaacccctagaccttattataataagaaacatatga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctctgttaaaccctttcctctcctaacccctagaccttattataataagaaacatatga 324

                                                                       
Query: 124 gcttttgaaaggaaccgaaaaaggtggcctttgaaacaaaataacacaattcttttaaat 183
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcttttgaaaggaactgaaaaaggtggcctttgaaacaaaataacacaattcttttaaat 384

                                                                       
Query: 184 ggcaacagaagttctctgtaacagtcaaggcaaagacatctccttgaccttctaaattaa 243
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcaacagaaattctctgtaacagtcaaggcaaagacatctccttgaccttctaaattaa 444

                                                                       
Query: 244 gtgcaatgagtttcacatttaccaagtactgactgaagtttctgactctgcgcatcagta 303
           |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct: 445 gtgcaatgagtttcacatttaccaagtactaactgaagtttctgactgtgcacatcagta 504

                                                                       
Query: 304 gagtaggagcagaagatcgtttttaattgttaaaccacaatctggtctatgagaagttgc 363
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 505 gagtaggagcagaagatcgtttttaattgttaaaccacagtctggtctatgagaagttgc 564

                                                              
Query: 364 aaatatcaatgaaattcataaagatgatcactgtgtttataagctttaaat 414
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatatcaatgaaattcataaagatgatcactgtgtttataagctttaaat 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 815
Length adjustment: 9
Effective length of query: 405
Effective length of database: 806
Effective search space:   326430
Effective search space used:   326430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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