BAC Information

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BAC

Clone NameMSMg01-344G09
Chromosome18 (Build37)
Map Location 21,241,099 - 21,241,580
singlet/doubletsinglet
Overlap geneMep1b
Upstream geneDsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, EG622978
Downstream geneGm944, LOC665722, LOC225264, Klhl14, 4921528I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344G09.T7 (MSMg01no344_g09.b1)MSMg01-344G09.TJ (MSMg01no344_g09.g1)
ACCAG457473AG457474
length729734
length of high quality
(start - end)		---481 (67 - 547)
definitionCHROMAT_FILE: MSMg01no344_g09.b1 PHD_FILE: MSMg01no344_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:34 2005CHROMAT_FILE: MSMg01no344_g09.g1 PHD_FILE: MSMg01no344_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTATTTTCNNCCCCTNNNCAACTCCCTTTCCCANAGGATCCGCGNAA
TTCTTTAATGCTCAAATATTTTATGATATCCNCNTATAANAACCACATTG
GNTTCACCGCACCACAAAAATTAAATGAAATTAAAAATACTCTGATGGNN
AAAATTTTTCATTTGTTTTCTAGTTANGAATANGCCTAAATCTTTAAAAC
TAACTTTGNNAATGANNNAAAATCCCCTTAAAAAATTTAAAGGGACGGCT
GGCGACGAACGAGCCGGGGGGGGGGCCGGGGGGGGAGACTGGGCGGCGNN
TNNNNNTAGNTTTCTAAGGGGAGGCGCGGGCGGGGCGCGGGGGGCGGGGA
GGGGGCGGCGGGAGGAGAGGGGGGGCGGGGGAAGGCGGGGGAGGCGGAAG
GGGGAGGGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGCGGNNNTAATNNN
NNNNNTNNNNTTTNTTTTTNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTN
NTNNNNNTNNTNNNTTTNNNNTTTTTTNNTTTNTNTNNNTTTNTTTTTTT
TNNNNTNNTTTTTTTTTTTTTTNNTNNTNNTTTTTTNNNNNNNTTTTTTT
TTTTTTTTTNTNTTTNNNTTTTNNNTNNTNNNNNTNNNTTTTTNTTTTTT
TTTTTTTTTTTNTTTNNTNNNNTTTTTTTTTTTTTTNNTNTNTTTNNTNN
TTTNTTTTTTATTTTTAATAATGTAAGGG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGCATAGGGGCTGGAGAGATGGCTCAGTGGTTAA
GAGCACTGGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCA
CATGGTAGCTTACAACCATCTGTAATAAGATCTGATGCCCTCTTCTGATG
TGTCTGAAGACAGCTACAGGGTACTCATGTAAATAAAATAAATAAATCTT
AAAAAAAGAGGGAGAATTCAGCATAGATCCTCCCATTTAGATAAAGAGAC
TCTTATATCACTGTATCTATGGTGATACAGTTTTTCCTGTTTCTTTCACT
CAGTGTACTGCACTTTTTTTTAATTTGGTGTTATTGTACGTTATATTTTG
TTTTTAATTTCATATCTCAGAGATCCAATTCTACTACGTAAATAGATATA
TAGTGCAGTTATGACACTTAGGTTGACAATACTCCCTAAAAGTCATGAAT
TACTTAACAAAATACTCCAATACCTTACATGAGAAACTATTGCACAAGTT
TAGGCAGATAAAGTGGCTCACATAACAGTATAGACCATTATTGTTGCTCT
TGGTTGTCTCTCAAGAGATTGAAGGTACATCCCCATCTTTTTTTTTTTTA
GGNATTTTCTTCACTTACATTTCAAATGCTATCCCCAAAGTCTTCCAGAA
AACCCCCCTCCCCTCCCCACCCAATTCCAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_g09.g1 MSMg01no344_g09.g1 CHROMAT_FILE:
MSMg01no344_g09.g1 PHD_FILE: MSMg01no344_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:34 2005
         (481 letters)



>mm_chr18_21240899_21241780
          Length = 882

 Score =  917 bits (474), Expect = 0.0
 Identities = 480/482 (99%), Gaps = 1/482 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcataggggctggagagatggctcagtggttaagagcactggactgctcttccagaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcataggggctggagagatggctcagtggttaagagcactggactgctcttccagaggt 260

                                                                       
Query: 61  cctgagttcaattcccagcaaccacatggtagcttacaaccatctgtaataagatctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgagttcaattcccagcaaccacatggtagcttacaaccatctgtaataagatctgat 320

                                                                       
Query: 121 gccctcttctgatgtgtctgaagacagctacagggtactcatgtaaataaaataaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccctcttctgatgtgtctgaagacagctacagggtactcatgtaaataaaataaataaa 380

                                                                       
Query: 181 tcttaaaaaaagagggagaattcagcatagatcctcccatttagataaagagactcttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttaaaaaaagagggagaattcagcatagatcctcccatttagataaagagactcttat 440

                                                                       
Query: 241 at-cactgtatctatggtgatacagtttttcctgtttctttcactcagtgtactgcactt 299
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcactgtatctatggtgatacagtttttcctgtttctttcactcagtgtactgcactt 500

                                                                       
Query: 300 ttttttaatttggtgttattgtacgttatattttgtttttaatttcatatctcagagatc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttttaatttggtgttattgtacgttatattttgtttttaatttcatatctcagagatc 560

                                                                       
Query: 360 caattctactacgtaaatagatatatagtgcagttatgacacttaggttgacaatactcc 419
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 caattctactacgtaaatagatacatagtgcagttatgacacttaggttgacaatactcc 620

                                                                       
Query: 420 ctaaaagtcatgaattacttaacaaaatactccaataccttacatgagaaactattgcac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaaaagtcatgaattacttaacaaaatactccaataccttacatgagaaactattgcac 680

             
Query: 480 aa 481
           ||
Sbjct: 681 aa 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space:   410712
Effective search space used:   410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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