Query= MSMg01no344_p14.b1 MSMg01no344_p14.b1 CHROMAT_FILE:
MSMg01no344_p14.b1 PHD_FILE: MSMg01no344_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:19 2005
(522 letters)
>mm_chr18_89324004_89324925
Length = 922
Score = 992 bits (513), Expect = 0.0
Identities = 516/517 (99%)
Strand = Plus / Minus
Query: 6 gaattctcacctttgctctatcccacaggtattatgggtatactttcttatcagcattca 65
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gaattctcacctctgctctatcccacaggtattatgggtatactttcttatcagcattca 696
Query: 66 gtaatttccattgtggtttctgctttaactttggggtaatttagaaatgtattcactttc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gtaatttccattgtggtttctgctttaactttggggtaatttagaaatgtattcactttc 636
Query: 126 aaatatattaacatacttcatctttttttattacttataactgaattacaaaatgcaaag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaatatattaacatacttcatctttttttattacttataactgaattacaaaatgcaaag 576
Query: 186 aattcttgtaatacacaaacttgctagagaccaagcagacatgggccatagagaagtctg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aattcttgtaatacacaaacttgctagagaccaagcagacatgggccatagagaagtctg 516
Query: 246 ttttccctaaattttgatagcaaaccttcaccaaattttgtagctcaaggttatcagttg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttttccctaaattttgatagcaaaccttcaccaaattttgtagctcaaggttatcagttg 456
Query: 306 tgatattcaggttttacacattcctttttatgtatttccaccttgatgtgtaagttgtaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgatattcaggttttacacattcctttttatgtatttccaccttgatgtgtaagttgtaa 396
Query: 366 atacttcattctttcctcaaacttgggagggtgagataggagggcaccagttcaaggcca 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atacttcattctttcctcaaacttgggagggtgagataggagggcaccagttcaaggcca 336
Query: 426 tattaagctatagtgcgagacttacctaaaaaaataaagtagtgataaaatgactccaaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tattaagctatagtgcgagacttacctaaaaaaataaagtagtgataaaatgactccaaa 276
Query: 486 caatactctgctatactcatggaccattgccttattc 522
|||||||||||||||||||||||||||||||||||||
Sbjct: 275 caatactctgctatactcatggaccattgccttattc 239
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_p14.g1 MSMg01no344_p14.g1 CHROMAT_FILE:
MSMg01no344_p14.g1 PHD_FILE: MSMg01no344_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:20 2005
(535 letters)
>mm_chr18_89107508_89108442
Length = 935
Score = 891 bits (461), Expect = 0.0
Identities = 523/559 (93%), Gaps = 25/559 (4%)
Strand = Plus / Plus
Query: 1 agccccaagccaacacttttattggtaccttttactattggattattttctacatagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 agccccaagccaacacttttattggtaccttttactattggattattttctacatagaaa 235
Query: 61 tatgagaaaggcagcagggcagtggtgcacacctttaatcccagccctcagaatgcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tatgagaaaggcagcagggcagtggtgcacacctttaatcccagccctcagaatgcagag 295
Query: 121 gcaggtagattccttgagtgcgagcccagcctgctctacagagtgagttccaggatatcc 180
||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 296 gcaggcagattccttgagtgcgaggccagcctgctcaacagagtgagttccaggatatcc 355
Query: 181 agggctgcacagagaaaccctatcttgaaaaaa---------------------acccaa 219
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 356 agggctgcacagagaaaccctatcttgaaaaaacaaaacaaaacaaaacaaaaaacccaa 415
Query: 220 a----caagaaaagaaatatgagagaggtttaaaatgcaatttcactggatttagccttg 275
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 416 aacaacaagaaaagaaatatgagagaggtttaaaatgcaatttcactggattcagccttg 475
Query: 276 actgcagtgtggatgctgtgtttcttatgtgtttggtcacatccatgaatgtagagaatc 335
|||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 476 actgcagtgtagatgctgtgtttcttatgtgtttggtcacatccatggacgtagagaatc 535
Query: 336 agcactgcgtgttctgagctaaaggcattttgaaaagttaagtatgggaaattccctctc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 536 agcactgcgtgttctgagctaaaggcattttgaaaagttaagtatgggaaattccctttc 595
Query: 396 agctctttcttcttgagagctggagattaaactcgcccatggcagctacccattcaaatc 455
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 596 agctctttcttcttgagagttggagattaaactctcccatggcagctacccattcaaatc 655
Query: 456 caggaagaagcaacatttctgtcaaagatgggatattaaaccaggtgaaggcaactttta 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 caggaagaagcaacatttctgtcaaagatgggatattaaaccaggtgaaggcaactttta 715
Query: 516 tcttgttagttactaactc 534
|||||||||| ||||||||
Sbjct: 716 tcttgttagtcactaactc 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
