NTTAATCATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCTTTTGCCCTTACAATTTCAAGAAACAGTTATACT
GGCTCAGGTTATTTTTTAAAAAGAGTAAAATTATAATTCATCAAAATCTA
ACTTGTATTTCTGTCCATGAAACCTTTTACATTAATGTCATTCTCAGAGG
TTTTTCCATCCATTGTTTTGGTTTTAGTAATTTCTTTAGGATCTTCTCTC
TATGGAATCATGCTATTTGTAAATAAACAGTGTTATGAATAAAGACAGGT
TTATTTCTGTTTTGTCAATTTAGATATCCTCTAACTTATTGTTATTGCCC
ATTGTTCTGGCTTGAACATGGTGTACAATGAGAGTGGACATGCTGTTAGC
CTTGTTCTTCCTCCTGTGGAGAAGTGTAGTCAGTCTGAAGGATTAGATAA
TTTGAGCTCTCCAGTTTGGTTAAGCGCCCTTATATAAAGTTGAGAGGAAG
TTTTCAATAGTCCTTAATTTGATTTTTTTTTCTTGAACAGATTTTAGATT
TTGTCCTAGCCTTTTCAATGTCTTATAGAGATGATCATTTTTTTTAAATA
GAGGTATTCATTTATCTGTTTAGTTTTATGCTTGAAACATTGTCCTTGTA
GATATTCTAGGTTGTCCTCCACCAAAGAATTTCTGGTTCAACCTCCTAAG
GGGTGAAATAAAAAGATCCATCCAAATGCCGGCTGGGAACAAATTTTAGG
GGC

NNCCCTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAA
TGCCTGAGAAACACCTGAAAAATGTTCAGCATCCTTAATCATCACGGAAA
TGCAAATCAAAACAACCCTGAGATTCCTTCTCACACCAGTCAGAATAGCT
AAGATCAAAAATTCAAGTGACAGCAGATGCTGGGGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCT
GGAAATCAGTCTGGGGGTTCCTCAGAAAATTGGACATAGTACTACTGGAG
GATCCCTCAATACCTCTCCTGGGCATATATGAAGAAGATGTTTCAACTAG
TAAGAAGGACACATGCTCCACTACGNCGATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATACCCCTCAACAGAGGAATAGATACAA
AAAAACGTGGTATGTTTACACAATAGAGTACTACTCAGCTAACTAAGGAA
GTGATCTGTATGGAAGTTCTTATCTGTATGATAAGAACTTCAATCTCTCT
GAGGAAAGAAATTATAGATCTCCGAATAGGGAAATATCTTCCCTTTGTTC
GTGGATTCTTTCGGAATTTATTTATAGTCTAATACTGTCTATATTTTGCC
CAATATTGCATCCTAATCTATCTTTCCTTGGTTACTTCCCTATTCAATAT
TTTCTT

Query= MSMg01no345_p10.b1 MSMg01no345_p10.b1 CHROMAT_FILE:
MSMg01no345_p10.b1 PHD_FILE: MSMg01no345_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:32 2005
         (546 letters)



>mm_chr18_89159174_89160120
          Length = 947

 Score = 1021 bits (528), Expect = 0.0
 Identities = 540/544 (99%), Gaps = 2/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccttttgcccttacaatttcaagaaacagttatactggctcaggttattttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccttttgcccttacaatttcaagaaacagttatactggctcaggttattttt 263

                                                                       
Query: 64  t-aaaaagagtaaaattataattcatcaaaatctaacttgtatttctgtccatgaaacct 122
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaaaaagagtaaaattataattcatcaaaatctaacttgtatttctgtccatgaaacct 323

                                                                       
Query: 123 tttacattaatgtcattctcagaggtttttccatccattgttttggttttagtaatttct 182
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttacattaatgtcgttctcagaggtttttccatccattgttttggttttagtaatttct 383

                                                                       
Query: 183 ttaggatcttctctctatggaatcatgctatttgtaaataaacagtgttatgaataaaga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaggatcttctctctatggaatcatgctatttgtaaataaacagtgttatgaataaaga 443

                                                                       
Query: 243 caggtttatttctgttttgtcaatttagatatcctctaacttattgttattgcccattgt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caggtttatttctgttttgtcaatttagatatcctctaacttattgttattgcccattgt 503

                                                                       
Query: 303 tctggcttgaacatggtgtacaatgagagtggacatgctgttagccttgttcttcctcct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctggcttgaacatggtgtacaatgagagtggacatgctgttagccttgttcttcctcct 563

                                                                       
Query: 363 gtggagaagtgtagtcagtctgaaggattagataatttgagctctccagtttggttaagc 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 564 gtggagaagtgtagtcagtctgaaggattagataatttgagctctccagttttgttaagc 623

                                                                       
Query: 423 gcccttatataaagttgagaggaagttttcaatagtccttaatttgatttttttttcttg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcccttatataaagttgagaggaagttttcaatagtccttaatttgatttttttttcttg 683

                                                                       
Query: 483 aacagattttagattttgtcctagccttttcaatgtcttatagagatgatcatttttttt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 684 aacagattttagattttgtcctagccttttcaatgtcttatagagatgatcattttttt- 742

               
Query: 543 aaat 546
           ||||
Sbjct: 743 aaat 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space:   502232
Effective search space used:   502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)