Query= MSMg01no346_o04.b1 MSMg01no346_o04.b1 CHROMAT_FILE:
MSMg01no346_o04.b1 PHD_FILE: MSMg01no346_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:41 2005
(511 letters)
>mm_chr18_17644872_17645782
Length = 911
Score = 804 bits (416), Expect = 0.0
Identities = 490/522 (93%), Gaps = 18/522 (3%)
Strand = Plus / Plus
Query: 5 gaattcctgtgta-ttctgacctctcatactattggtggtttttaccaagaaatcag-tc 62
||||||||||| | || |||||||||||| |||||||| |||| ||||||||| ||| ||
Sbjct: 193 gaattcctgtgcactt-tgacctctcatattattggtgatttt-accaagaaa-caggtc 249
Query: 63 atggagctgtcatgtagctcttgaaccaccatgataatcaaagaaagaatgtgatcttgt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atggagctgtcatgtagctcttgaaccaccatgataatcaaagaaagaatgtgatcttgt 309
Query: 123 caatgtgtggagtttctagatatattttctttttccctttcttcatctggttgttaattg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caatgtgtggagtttctagatatattttctttttccctttcttcatctggttgttaattg 369
Query: 183 ccctctagtcagtttttctgctggtattttaagcatgtatatagagaaattagtattttt 242
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 370 ccctctagtcagtttttctgctggtgttttaagcatgtatatagagaaattaatattttt 429
Query: 243 ctaacgtgtggcatttttaaaatgttttgaattctttatttgatggattatggttgtagt 302
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctaaagtgtggcatttttaaaatgttttgaattctttatttgatggattatggttgtagt 489
Query: 303 tagatgtaaatagta-cctacatctatctct------------gatatatgtaataatag 349
||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct: 490 tagatgtaaatagtagcctacatctatctctaggttttaacatgatatatataataatag 549
Query: 350 gccacatgctggactaaacattttattagtactgtaataatcacaagaaaaacaataaaa 409
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 550 accacatgctggactaaacattttattagtactgtattaatcacaagaaaaacaacaaaa 609
Query: 410 agtggttgacaatttaatcataatttctgaatatcggagatattctcatgttatcatcat 469
||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 610 agtggttaacaacttaatcataatttctgaatatccgagatattctcatgttatcatcat 669
Query: 470 agctgatttgatcatccatggctgtgaatatgtgattactgg 511
||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 670 agctgatttgatcgtccatggctgtgaatatgtgattactgg 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_o04.g1 MSMg01no346_o04.g1 CHROMAT_FILE:
MSMg01no346_o04.g1 PHD_FILE: MSMg01no346_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:41 2005
(430 letters)
>mm_chr18_17834133_17834962
Length = 830
Score = 770 bits (398), Expect = 0.0
Identities = 422/430 (98%), Gaps = 1/430 (0%)
Strand = Plus / Minus
Query: 1 tcctcactccactgctggacatgatgactagagatgaactaaagatttttattcactcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 448 tcctcactccactgctggacatgatgactagagatgaactaaagatttttattcattcct 389
Query: 61 ggaatgactatgagaaagattatgaatatttcatgaaaaagtcaccaatcagtgtgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 388 ggaatgactatgagaaagattatgaatatttcatgaaaaagtcaccaatcagtatgagat 329
Query: 121 atttgctaattgagctactatgagtggtcactgcatcagtatctgagcttttgtccctga 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 328 atttgctaattgagctactatgagtggtcactgtatcagtatctgagcttttgtccctga 269
Query: 181 taaaataaatctttttgagatgaaatgtgcaatgtgcaatttttacaaggtatcatttgg 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 268 taaaataaatctttttgagatgaaatgtgcaatgtgcaatttttacaaagtatcatttgg 209
Query: 241 cattgtgatgtgggaactaaaaagggggcctggggaagaggggggagaaagaacccacat 300
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 208 cattgtgatgtgggaac-aaaaagggggcctggggaagaggggggaggaagaacccacgt 150
Query: 301 tccgccagagttccacctatactctgtacaggcagatgtggtaggctgccagatgctttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tccgccagagttccacctatactctgtacaggcagatgtggtaggctgccagatgctttc 90
Query: 361 cactcagcaccaggtgggcatccaagcctctgacctcctggatgggcggtgcgggggaag 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 cactcagccccaggtgggcatccaagcctctgacctcctggatgggcggtgcgggggaag 30
Query: 421 ggggtggtgg 430
||||||||||
Sbjct: 29 ggggtggtgg 20
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
