Query= MSMg01no349_p10.b1 MSMg01no349_p10.b1 CHROMAT_FILE:
MSMg01no349_p10.b1 PHD_FILE: MSMg01no349_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:44 2005
(589 letters)
>mm_chr18_44399549_44400537
Length = 989
Score = 1050 bits (543), Expect = 0.0
Identities = 549/551 (99%)
Strand = Plus / Minus
Query: 4 ggaattctgtaaaatcattaattcatccaagcaacattactttatgaatgttcatatgca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggaattctgtaaaatcattaattcatccaagcaacattactttatgaatgttcatatgca 492
Query: 64 tattgatccatagtaaaattgcccattattgtgggttgtttcccaagaagctcacatgtc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tattgatccatagtaaaattgcccattattgtgggttgtttcccaagaagctcacatgtc 432
Query: 124 ttgcatggtgcccaccacatttaaaaatatttcccaatgttttgtaagttatacatctag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttgcatggtgcccaccacatttaaaaatatttcccaatgttttgtaagttatacatctag 372
Query: 184 aagtaccatatataattaaatacttcataaccctacctgccaggggtgccaatgttgtgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aagtaccatatataattaaatacttcataaccctacctgccaggggtgccaatgttgtgg 312
Query: 244 gggtatccaccagagaagtctactggcacatacatgaaagtcaatagaaagtctttagcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gggtatccaccagagaagtctactggcacatacatgaaagtcaatagaaagtctttagcc 252
Query: 304 agagggtgagtacactgggtattcctgatcccaatatagcatgaagcctttctcaggatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agagggtgagtacactgggtattcctgatcccaatatagcatgaagcctttctcaggatg 192
Query: 364 agcttttgagcataaaaaccatgttctgggttgacatgcctcagttaacaagaacagccc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 agcttttgagcataaaaaccatgttctgggttgacatgcctcagttaacaagaacagccc 132
Query: 424 gaagcagaactacagaggctgaaaatcaagattagtacattcagcgactttctcaaaact 483
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 131 gaagcagaactacagaggctgaaaatcaagattagtacattcagtgactttctcaaaact 72
Query: 484 aagatctttgatggactaggcctttgttttggttttactagatagtgttgtctatgtgcg 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 71 aagatctttgatggactaggcctttgttttggttttactagatagtgttgtctatgtgtg 12
Query: 544 gagttttacag 554
|||||||||||
Sbjct: 11 gagttttacag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_p10.g1 MSMg01no349_p10.g1 CHROMAT_FILE:
MSMg01no349_p10.g1 PHD_FILE: MSMg01no349_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:44 2005
(628 letters)
>mm_chr18_44233351_44234383
Length = 1033
Score = 1127 bits (583), Expect = 0.0
Identities = 619/634 (97%), Gaps = 7/634 (1%)
Strand = Plus / Plus
Query: 1 agagaaattgagaagac-caaaaaatgagggatcagaaagaggagggaatcagtctttaa 59
|||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaaatagagaaggcacaaaaaatgagggatcagaaagaggagggaatcagtctttaa 260
Query: 60 gtatgtatgcatgggtcatatctttaagattaatttttgatagaaagcccagatgagcaa 119
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatgtatgcatgggtcctatctttaagattaatttttgatagaaagcccagatgagcaa 320
Query: 120 tactgagttcagcaaatagcaaactttcaactctgcatgtcacatactttgacagaaggc 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgagttcagcaaatagcaaactttcaactctgcatgtcacatactttgacagaaggc 380
Query: 180 aagggaactaactgttccttgagatgctggtcagaggagactttccaagaccacttttgt 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 aagggaactaactgttccttgagatgctggtcagaggagacgttccaagaccacttttgt 440
Query: 240 gaagtaagaccaagaatgataaagtcactcccatcgtggatgaaaagtgagaccaaggct 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 gaagtaagaccaagaatgataaagtcactcccatcatggatgaaaagtgagaccaaggct 500
Query: 300 gtcatgaatctctagatcttaaacctctatctttcacttaaccctgatcctcaacaaaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcatgaatctctagatcttaaacctctatctttcacttaaccctgatcctcaacaaaat 560
Query: 360 aggtgagcagacttgaaaatgagacctataggtctttaggacatggacaagagctgctaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtgagcagacttgaaaatgagacctataggtctttaggacatggacaagagctgctaa 620
Query: 420 g-----tgcatattgctactaaatttgcagatctctttttgtacattcagaaattacagt 474
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 gataagtgcatattgctactaaatttgcagatctctttttgcacattcagaaattacagt 680
Query: 475 gttcggaatttgtgcttttttttccaggtgccttcagtcaaggaggacaggttagtacct 534
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttcggaatttgtgcttttttt-ccaggtgccttcagtcaaggaggacaggttagtacct 739
Query: 535 atatgtctctatttttctggtctaggtagtatatgactgctattccgttgctaanatgag 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 740 atatgtctctatttttctggtctaggtagtatatgactgctattccgttgctaaaatgag 799
Query: 595 atttacctatcctatgaaagaagttagggagggt 628
||||||||||||||||||||||||||||||||||
Sbjct: 800 atttacctatcctatgaaagaagttagggagggt 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1033
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1023
Effective search space: 632214
Effective search space used: 632214
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
