Query= MSMg01no350_n22.b1 MSMg01no350_n22.b1 CHROMAT_FILE:
MSMg01no350_n22.b1 PHD_FILE: MSMg01no350_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:57 2005
(474 letters)
>mm_chr18_87846110_87846985
Length = 876
Score = 851 bits (440), Expect = 0.0
Identities = 464/472 (98%), Gaps = 2/472 (0%)
Strand = Plus / Plus
Query: 5 gaattctatatctatccgtatataatgaatatcataggcttattctggtataaagagaag 64
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattctatatctatctgtatataatgaatatcataggcttattctggtaaaaagagaag 264
Query: 65 gctgattttatgagaataattaagg-tgttgcacatgcttctaacacttctttataataa 123
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 actgattttatgagaataattaaggttgttgcacatgcttctaacacttctttataataa 324
Query: 124 gcatgcttccagaaagagagagtactgaagtgtatgtaaaaacctttcctagttcatgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 gcatgcttccagaaagagagagtactgaagtgtatgtaaaaacctttcctatttcatgat 384
Query: 184 acagaatttaacaatacaggctagacataaagtgctaattataagttcaacaacctcact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagaatttaacaatacaggctagacataaagtgctaattataagttcaacaacctcact 444
Query: 244 tttgtcattttaattcttaa-tttcttttacattttatgttgtaattttaatattgacca 302
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 tttgtcattttaattcttaattttcttttacattttatgttgttattttaatattgacca 504
Query: 303 attttgtaaagttcgtttgcataaccacatattgatctgtaagcagagtgaacgttgtag 362
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attttgtaaagtttgtttgcataaccacatattgatctgtaagcagagtgaacgttgtag 564
Query: 363 cttgttggtgagtgctgttggttgattcactgtaattttggattctgtacacctcgtgct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttgttggtgagtgctgttggttgattcactgtaattttggattctgtacacctcgtgct 624
Query: 423 gagcactgaggtatttggtacacttatcatacctgttggatgcagcttcgtc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagcactgaggtatttggtacacttatcatacctgttggatgcagcttcgtc 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 876
Length adjustment: 10
Effective length of query: 464
Effective length of database: 866
Effective search space: 401824
Effective search space used: 401824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_n22.g1 MSMg01no350_n22.g1 CHROMAT_FILE:
MSMg01no350_n22.g1 PHD_FILE: MSMg01no350_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:57 2005
(465 letters)
>mm_chr18_88042182_88043046
Length = 865
Score = 884 bits (457), Expect = 0.0
Identities = 463/465 (99%), Gaps = 1/465 (0%)
Strand = Plus / Minus
Query: 1 cacctaacaacaatcagaatgactaagatcaaaacctcaggtgataacacatgttgaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cacctaacaacaatcagaatgactaagatcaaaacctcaggtgataacacatgttgaaag 635
Query: 61 aggatgtggagaaagatgaatgctcctccattgctggtcgagttgcaaactggtacaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aggatgtggagaaagatgaatgctcctccattgctggtcgagttgcaaactggtacaaac 575
Query: 121 actctggaaatcaatctggaggttcctcagaaaattggaaataggtctatcaagctcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 actctggaaatcaatctggaggttcctcagaaaattggaaataggtctatcaagctcttt 515
Query: 181 tgcatttcatttagatggcaaaagcagttgagctgcataatttaataactcttatttcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgcatttcatttagatggcaaaagcagttgagctgcataatttaataactcttatttcac 455
Query: 241 ccttgataaacttcactttctgccaccaaggataaaacagcattagttaatttttagatt 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 454 ccttgataaacttcactttctgccatcaaggataaaacagcattagttaatttttagatt 395
Query: 301 ttcattttttctactccccccacttttttttttcttttttcttctttttcttcttttgag 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 394 ttcattttttctactccccccacttttttttt-cttttttcttctttttcttcttttgag 336
Query: 361 gacaccaggtttgagaactaaacaagttactctaaatgcattttaaagttcatttgatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gacaccaggtttgagaactaaacaagttactctaaatgcattttaaagttcatttgatac 276
Query: 421 ctctgcggtaaaaatgtccacatttggtaatcctcacaagcaaag 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctctgcggtaaaaatgtccacatttggtaatcctcacaagcaaag 231
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
