BAC Information

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BAC

Clone NameMSMg01-351E05
Chromosome18 (Build37)
Map Location 60,976,883 - 60,977,346
singlet/doubletsinglet
Overlap geneTcof1
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74
Downstream geneLOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351E05.T7 (MSMg01no351_e05.b1)MSMg01-351E05.TJ (MSMg01no351_e05.g1)
ACCAG462677AG462678
length749814
length of high quality
(start - end)		468 (54 - 521)34 (158 - 191)
definitionCHROMAT_FILE: MSMg01no351_e05.b1 PHD_FILE: MSMg01no351_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:28 2005CHROMAT_FILE: MSMg01no351_e05.g1 PHD_FILE: MSMg01no351_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAATACCTATACGAGACCCTGGATAAGGGACAGGCCTC
CAGGGGCTGCTCTGGCTCACACTACTGTAGCCTTGACAAGCTCCTGACCC
TGTGTCTTAATCACACAAGGTAAGAGCAATGCCATTGTGCAGGGTCAAAA
GCAGAGCATAAAGAAAACTGTCACATGACATTTGGAGGGACCCAGGGGAA
GGGACTGTTGGGAGTGCCCACATCCCTGACTTATATAACATGAAGCATCC
CGTCCCACTCCTGTCCGCTTCTCCTTAACGGTACTCACTGCTAGGGTTCA
GCCCCTGTGCCCAGCATGTAGGCATTCCTTGCTGCACAGGTGACCTGGGA
GGCCAGCGGGGGTTCTGGGCCGAGGCTCTGGGGGCTGGTAACTTCAGCTT
CCCAGCGCTGGGTCAGAGGCGGAGCTGTTGCTCACTTTCTTCGCCAGTGT
TCTTGTCTATGTGAGAGGCGGGTGCGAGCGACAAGGAGACATTTTCGAGG
GGGCTGTGGAAGGTTTTTTTTTTTTTTTTTTTACACGTGTATTCCGCCCC
CCTTTATCTACAGGCAGCAGAGGGGTATAATATTCCTAAACAAGGTCTCG
CCCATAAGCCCTCTTGTTATTTTCCTATTCTTGGTTATTCAAACCGCTGT
TGGTTTACTTTTTATTATTTCGATATTTTTCTCCAATTTGACATGTCGC

NNNNCCCCTATGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGAATAGTTGGAGGAT
AGATAGGTACACCCGNAGATCATAAGATAGATCCATCCCTCCCTCGGTGC
CTCCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCNNCC
CCCGCCCCCCCCCCCCCCCCCCCCCCCCCGGNCCCGNCGNCCCCCCCCCC
CCGCCCCCCCGCCCCCCCTCCCCCCCTCTGCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCTCCCCCCCCCCCCCCCCCCGCTTCCCTTTCTCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCTTCCCCCTCCCCCCCCCCCCCCCCCCCCC
CCCCCCCTCCCCCCCCCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCT
CGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTCCCCCCCCCCCC
CCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCTTCCCC
CCCCCTCCTCCCCCTCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCTTC
CCCCCCCCCTCCCCCCCTTCCCCCCCCCTCCCCCCCCCCCCCTCCCCCCC
CCCCCCTCCCCCCCCCCTTCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCTCTCCTCC
GTCCCCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_e05.b1 MSMg01no351_e05.b1 CHROMAT_FILE:
MSMg01no351_e05.b1 PHD_FILE: MSMg01no351_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:28 2005
         (468 letters)



>mm_chr18_60976679_60977546
          Length = 868

 Score =  835 bits (432), Expect = 0.0
 Identities = 456/464 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatacctatacgagaccctggataagggacaggcctccaggggctgctctggct 64
           |||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 668 gaattcaatacctagaggagaccctggataagggacaggcctccgggggctgctctggct 609

                                                                       
Query: 65  cacactactgtagccttgacaagctcctgaccctgtgtcttaatcacacaaggtaagagc 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cacactgctgtagccttgacaagctcctgaccctgtgtcttaatcacacaaggtaagagc 549

                                                                       
Query: 125 aatgccattgtgcagggtcaaaagcagagcataaagaaaactgtcacatgacatttggag 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aatgccatcgtgcagggtcaaaagcagagcataaagaaaactgtcacatgacatttggag 489

                                                                       
Query: 185 ggacccaggggaagggactgttgggagtgcccacatccctgacttatataacatgaagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ggacccaggggaagggactgttgggagtgcccacatccctgacttatataacatgaagca 429

                                                                       
Query: 245 tcccgtcccactcctgtccgcttctccttaacggtactcactgctagggttcagcccctg 304
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 428 tcccgtcccactcctgtccgcttctccttaaccgcactcactgctagggttcagcccctg 369

                                                                       
Query: 305 tgcccagcatgtaggcattccttgctgcacaggtgacctgggaggccagcgggggttctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgcccagcatgtaggcattccttgctgcacaggtgacctgggaggccagcgggggttctg 309

                                                                       
Query: 365 ggccgaggctctgggggctggtaacttcagcttcccagcgctgggtcagaggcggagctg 424
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggcccaggctctgggggctggtaacttcagcttcccagcgctgggtcagaggcggagctg 249

                                                       
Query: 425 ttgctcactttcttcgccagtgttcttgtctatgtgagaggcgg 468
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttgctcactttcttcgccagtgttcttgtctatgtgagaggcgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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