BAC Information

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BAC

Clone NameMSMg01-352J01
Chromosome18 (Build37)
Map Location 52,934,244 - 52,934,528
singlet/doubletsinglet
Overlap geneSncaip
Upstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, A730036E13Rik
Downstream geneLOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352J01.T7 (MSMg01no352_j01.b1)MSMg01-352J01.TJ (MSMg01no352_j01.g1)
ACCAG463661AG463662
length787748
length of high quality
(start - end)
285 (75 - 359)---
definitionCHROMAT_FILE: MSMg01no352_j01.b1 PHD_FILE: MSMg01no352_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:09 2005CHROMAT_FILE: MSMg01no352_j01.g1 PHD_FILE: MSMg01no352_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCCTGCTTTCCGGACATCTCTAGAGAGATGTTCACAGGGA
AACAAGACACTACAATGCTGTCAGTCTTTGTCTCCTCAAGTGAAACAAAA
GAGAATTGAATAAGCAAAGCAATATAAGGAATCTAGGGAGTACCCCAAGC
AGAGCACCTTGGATCTCACAAATGCAGCCACTAGCTGTCCTCCTTTGTGA
TCTGAGAAATGATTCTCCCAATCCCCAAGCCATATATGTCAGCCCAGAAA
ATTTGGTTTGCTTCTTTATCAAGCTCTATCTTGATGTGGTCATTTGGGAC
TAATTAAAAGTCAATCATAAAAAAAATAATACTTTTGACAAATTATCTGA
AAAGACCTTCTTAAGGAATCTCGCCCCATGTTCAATATTTTGAGCTACCA
ATCTGAGACTCCTGTTAATGAACCCCCCCCCCTTATAAAAATTACTTCTA
CGAGTACAACATCTCCTATGAGGTACGACCCCTAGTTTTTCCTCCGCCGC
CTTTCCCCTTCTTGTTACTTTCCATGATTAACCTGTTTAGGGCCTTTTTA
CTTCTCTTTTTCACCCTGTCCAACGCTCCCCTAACCGCCTCCGTTTATTT
TGTCTCTTTTATTCTTTAACTTCCCATCCCCTTTTTGTTTGTATTTCCCA
CATCCCTTCATTTTTATCTTTTCCAAGACCTTCTCTCCCCCTTCCCCTCC
TTTTTCTGTCTCCTTTTCCTCCCTCCCCCTCCTTTTN
CCTTCATTTATTTTCTATATACCCCCTCCCCCATAATCTTCTCCTTTTTC
TCCATTTTACCACAAAAATCTCTCCACATTTACCCATTCCCCCCCCCCCC
CTTTACTTTATACATTCACACTCATTATATTAACCTACCACTTCTATATT
TACTATAATATACACACTTCTTCTTTACATACATATTATAATAATCCTCC
ACCACATTTTTCCATCCTCCCTTACAACAATCTACTATTAACCCTTCACC
ACTACACATACATCCTTAACACAATATTATCTTTATTACATCTCTTCCTC
CCCCCCATATCTTATTACCTACCCCCCCCTTCTCTTATCCCAATTTTATT
TCCTCTTCCCTTTCCTATTTTTACCCCACTTATCAATCTTATCCCTATTA
TAATCTCTTATCCCCTTTCCCTTAACCCCCTTCCCATTTAATAATCCTTT
ACCCTAATTTACTTCACCTTTTTCTTATACTACATTATAACTACCCTCNC
CCCCCCTTTTATCTCCCCTCCTAATCCTAGTTGAGATTAGGCCCCTGGAC
GGCTCGCCCCTGGNCCCTCCCCAACNATAAAGGTTGTCACTCTTAAATGC
AGTGGGATTNGCGGCCGAGAATNTTGCTACTNCACCACTCCTGTCAAAAT
GGGGATNCCCCCAGGNGGCGCCCCCTCCCCTGGGATAAACACAAAATGCT
CCCCAATTTTAACTCNCCCTCCCCCNNAATGNGAGCCTCTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_j01.b1 MSMg01no352_j01.b1 CHROMAT_FILE:
MSMg01no352_j01.b1 PHD_FILE: MSMg01no352_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:09 2005
         (285 letters)



>mm_chr18_52934044_52934728
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctctagagagatgttcacagggaaacaagacactacaatgctgtcagtctttgtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 catctctagagagatgttcacagggaaacaagacactacaatgctgtcagtctttgtctc 426

                                                                       
Query: 61  ctcaagtgaaacaaaagagaattgaataagcaaagcaatataaggaatctagggagtacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctcaagtgaaacaaaagagaattgaataagcaaagcaatataaggaatctagggagtacc 366

                                                                       
Query: 121 ccaagcagagcaccttggatctcacaaatgcagccactagctgtcctcctttgtgatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccaagcagagcaccttggatctcacaaatgcagccactagctgtcctcctttgtgatctg 306

                                                                       
Query: 181 agaaatgattctcccaatccccaagccatatatgtcagcccagaaaatttggtttgcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agaaatgattctcccaatccccaagccatatatgtcagcccagaaaatttggtttgcttc 246

                                                        
Query: 241 tttatcaagctctatcttgatgtggtcatttgggactaattaaaa 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttatcaagctctatcttgatgtggtcatttgggactaattaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)