Query= MSMg01no352_n21.b1 MSMg01no352_n21.b1 CHROMAT_FILE:
MSMg01no352_n21.b1 PHD_FILE: MSMg01no352_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:34 2005
(470 letters)
>mm_chr18_42055361_42056229
Length = 869
Score = 820 bits (424), Expect = 0.0
Identities = 455/466 (97%), Gaps = 4/466 (0%)
Strand = Plus / Minus
Query: 8 ggaattcactatatataacagggtaactttgaattcatggtgattctcctgcttcagctc 67
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ggaattcactatatagaacagggtaactttgaattcatggtgattctcctgcttcagctc 732
Query: 68 cacaaatattgtctgtcacatgtgatcctaaactgtttttta-tttttatttttaa--tt 124
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 731 cacaaatactgtctgtcacatgtgatcctaaactgttttttattttttatttttaatttt 672
Query: 125 tccccccaaatttcctgagcaaaagaaactgcatctttttcagttaattaatttctttta 184
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttcccccaaatttccggagcaaaagaaactgcatctttttcagttaattaatttctttta 612
Query: 185 tattgattcccagcttaagtagaatttaaaggtataattaaaattattcttgatcagtga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tattgattcccagcttaagtagaatttaaaggtataattaaaattattcttgatcagtga 552
Query: 245 cctttagtaggatatagcttttgttatttttaaagatacttaatttgtcaaaaacttgac 304
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cctttagtagggtatagcttttgttatttttaaagatacttaatttgtcaaaaacttgac 492
Query: 305 tttttttattagtctctaatcttttccatatgtctgaaatagttaacattcaaagaagtt 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 -ttttttattagtctctaatcttttccatatgtctgaaatagttaacattcaaagaagtt 433
Query: 365 atgacattcttctcccaaagacttttaaaatcttttacacaatttttactagacttgttt 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 432 atgacattcttctcccaaagacttttaaaatcttttacacaatttttcctagacttgttt 373
Query: 425 aagtctgtttctaagtaactagtatatgaactgaataactagttcc 470
||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aagactgtttctaagtaactagtatatgaactgaataactagttcc 327
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 869
Length adjustment: 10
Effective length of query: 460
Effective length of database: 859
Effective search space: 395140
Effective search space used: 395140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_n21.g1 MSMg01no352_n21.g1 CHROMAT_FILE:
MSMg01no352_n21.g1 PHD_FILE: MSMg01no352_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:34 2005
(403 letters)
>mm_chr18_41888177_41888979
Length = 803
Score = 741 bits (383), Expect = 0.0
Identities = 398/403 (98%)
Strand = Plus / Plus
Query: 1 ctgctttgacaagactctcgacctggtgtgtttcttttggccattcgactctcaccatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctttgacaagactctcgacctggtgtgtttcttttggccattcgactctcaccatcc 260
Query: 61 actcagccccagacagaccccactggacagggttctctcctctcacctggacctgccatc 120
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 actcagccccagacagaccccgctggacagggttctctcctctcaccaggacctgccatc 320
Query: 121 aaagagtcgacatatcactatgtgaccttctgacttacaaagataattaatatgcataca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagagtcgacatatcactatgtgaccttctgacttacaaagataattaatatgcataca 380
Query: 181 tgaaatgacagcatgctgcctgccactttgctgtctcactccagcagacaggggatgatt 240
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaatgacagcatgttacctgccactttgctgtctcactccagcagacaggggatgatt 440
Query: 241 caatgaatgccaactctattatcaaggtgtccaatatcaaccaaatatctaccactagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatgaatgccaactctattatcaaggtgtccaatatcaaccaaatatctaccactagca 500
Query: 301 gaagaagagataaaatgtacccgtgccctaaatataaagtccccggaaaacctgctttta 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gaagaagagataaaatgtacccgtgccctaaatataaagtcccctgaaaacctgctttta 560
Query: 361 atataaaagacttattcatccatttatccacttactcataaac 403
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atataaaagacttattcatccatttatccacttactcataaac 603
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
