Query= MSMg01no353_m19.b1 MSMg01no353_m19.b1 CHROMAT_FILE:
MSMg01no353_m19.b1 PHD_FILE: MSMg01no353_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:46 2005
(592 letters)
>mm_chr18_22526703_22527696
Length = 994
Score = 1085 bits (561), Expect = 0.0
Identities = 585/597 (97%), Gaps = 8/597 (1%)
Strand = Plus / Plus
Query: 4 ggaattccttcctgtcggatatttattttttcatgcagattacatatatgtgcatgtatc 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ggaattccttcctgtgggatatttattttttcatgcagattacatatatgtgcatgtatc 257
Query: 64 ta------tatctatctatctatctatctatatatatatatatatacatatagaatatat 117
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 258 tatctatctatctatctatctatctatctatctatatatatatatacatatagaatatat 317
Query: 118 tataacacttaagcgatgataatcacttttaattttgggggtgtatatatctctgatgtg 177
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 318 tataacacttaagcgatgataatcacttttaattttgggggtgtatgtatctctgatgtg 377
Query: 178 tctttcccttttcattctttttctgtataatgaaaacatcacacttgccaggccgactgg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tctttcccttttcattctttttctgtataatgaaaacatcacacttgccaggccgactgg 437
Query: 238 aggaactatacagtgcaggttctcttgtggaatatacttggccatggccagtggatgagg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aggaactatacagtgcaggttctcttgtggaatatacttggccatggccagtggatgagg 497
Query: 298 actggtgatatttgggtagcataataatacctactgctcatcattgtcttaaagcttccc 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 498 actggtgatatttgggtagcataataatacctactgcccatcattgtcttaaagcttccc 557
Query: 358 c--tttttttagtggtgggaagatattgacaagatttgtgtttcaaggctaaatacaaag 415
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccttttttttagtggtgggaagatattgacaagatttgtgtttcaaggctaaatacaaag 617
Query: 416 tgctcccccctcgatgctattagcttattagctgtcattgctgtaggaagtcatttggtt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgctcccccctcgatgctattagcttattagctgtcattgctgtaggaagtcatttggtt 677
Query: 476 cattgagataataagtgcttccgattcattttctcattcagtcctcaggacacatttatg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cattgagataataagtgcttccgattcattttctcattcagtcctcaggacacatttatg 737
Query: 536 aatgatgaagtgaagaaattgcgactcagggtgttaagcatattatctaacatcaga 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aatgatgaagtgaagaaattgcgactcagggtgttaagcatattatctaacatcaga 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 994
Length adjustment: 10
Effective length of query: 582
Effective length of database: 984
Effective search space: 572688
Effective search space used: 572688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_m19.g1 MSMg01no353_m19.g1 CHROMAT_FILE:
MSMg01no353_m19.g1 PHD_FILE: MSMg01no353_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:46 2005
(498 letters)
>mm_chr18_22651868_22652765
Length = 898
Score = 963 bits (498), Expect = 0.0
Identities = 498/498 (100%)
Strand = Plus / Minus
Query: 1 catttgcaaagaaaactcacaaccacaaaaaatttggaccacaacagactaacaacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 catttgcaaagaaaactcacaaccacaaaaaatttggaccacaacagactaacaacaaac 639
Query: 61 caaggacctaagaatcttatagacgcaaacattctgtctcaaaatacatttttaaagtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 caaggacctaagaatcttatagacgcaaacattctgtctcaaaatacatttttaaagtca 579
Query: 121 caaaatgaaatgtcaaacatgccaccaacaagcatctaatgggtggctttcaaatgtaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 caaaatgaaatgtcaaacatgccaccaacaagcatctaatgggtggctttcaaatgtaat 519
Query: 181 aatctctgctttcattgggaatagaaatacctgatttgatactctgtcacaattaacaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aatctctgctttcattgggaatagaaatacctgatttgatactctgtcacaattaacaca 459
Query: 241 gtgataacatgttgtcaggccattgttccttcacttccccatttctccaaactgattctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtgataacatgttgtcaggccattgttccttcacttccccatttctccaaactgattctg 399
Query: 301 gaactgcatacaggagagatgctcccaagagataaggaactttcatgacaaatgtcactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaactgcatacaggagagatgctcccaagagataaggaactttcatgacaaatgtcactg 339
Query: 361 atagcatatcccaaagttgggccaagcagatgtcttaccacccatgtcaaaaacctggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atagcatatcccaaagttgggccaagcagatgtcttaccacccatgtcaaaaacctggtc 279
Query: 421 atggtgacctaacataagatgaacttggggatcctgcagaagagggaagaacagaggcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atggtgacctaacataagatgaacttggggatcctgcagaagagggaagaacagaggcag 219
Query: 481 aggaatcaaggacaccac 498
||||||||||||||||||
Sbjct: 218 aggaatcaaggacaccac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
