BAC Information

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BAC

Clone NameMSMg01-355E22
Chromosome18 (Build37)
Map Location 88,816,834 - 88,817,204
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355E22.T7 (MSMg01no355_e22.b1)MSMg01-355E22.TJ (MSMg01no355_e22.g1)
ACCAG465726AG465727
length805769
length of high quality
(start - end)		319 (50 - 368)451 (81 - 531)
definitionCHROMAT_FILE: MSMg01no355_e22.b1 PHD_FILE: MSMg01no355_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:43 2005CHROMAT_FILE: MSMg01no355_e22.g1 PHD_FILE: MSMg01no355_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACACAGAATAGAGATAAATGGAGACTCTGTGTAACACAAGT
CTACACAGCCCCCCCCCAGCCCCCGGTTGGGTTGTTTGCCCCTGAAACAC
ATGGAGTTTGACTGAGCTTATCCCATAGGGCCTGGTGCTAGGCTGTAGGG
AAGCACTAAAACACCGCTTGAGGGGGAGGGGTAGTGAGAGGAGGAAGTGC
AGTCTTATGTGTGGGAAAGCTGGAGCTGGTTTGGGTTCGGGGATTCTCAG
ACCCTTGGATATCCAGGCTCCATTGGTATGTCATGGAAGAGAAGGTTGGT
GATATCATATAGCCTGGGTTGGCGGAAGAGGAGGGAGGCATTATTTTTCT
TCCACCTTTTCTTTTTCCCTTTCCGACTCTCTTTCTTTTTTCTCTTCCCG
TCTCTTGTTTTATTTCCCCTTTTTCCATCTTCTTTTTTTTTCCGCGTCAT
TTTACCTTATCTTCATCTCTTCTCTCCTCTCTTTCCCTCCTTTCATCATT
TTTATCTTCATTGCCCTCCCTTTTATCCTTTCTATTTTTCCTTTCTCTTT
ATATTATCTTATTTTGAGTTCTAATTGATAATTATTACACTCCTCTTTTT
CCCCCTGTTTTTTTCTACTCCCCCTACTATTTTTATCCTATCTCCATCCC
CATTTCTTCCTTATCCCACCTCCTATCTTTTTACTCTCTCACTCCTACTA
TTAATACCATTTTTTTACCCTTTTTCTTTTCCACTTTTTTTTTCCCTCTC
CCCCN

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTAGCAGGAACTCAAGA
CAGCTGCTTATATGATATTCACAGCCCAAAGCAGAGCTAAACAAATATGT
TTATGCACACTTATTTGCTCAATTTTTCCACTCTTTTGCAGTTTAGGAAT
CCCTTCCTAGGGAAAGACAGCATCCATACTAGGCAGAATCTATCCACATA
GATTTATTTAATTAAGAAAATTTTCCATAGACATATTTACAGGCCAACCC
AATGTAGACAGTCTCCCAATAAGATTCTCTTCCTAGGTTATTCTAGGTAA
TAAGTTGTCAATAGAAGCTAAGTTCCATAACTATGGAGCTTAGAGTTCAC
ACAGACATTTCAGTAACGGTGGGTGAGTCTTTCTCTTTCTTCATTCCCAG
TTCTTGTTTAGATGCCAATGTGACTATCACTAATGCTTTTGTGGAGGCTT
CTTAAACTCAATGCTATATGCATTCTACAATTGTTTTGAGATTTTATAGT
TATAGCAGCATTTAGTCATTCTCTGTTCCTTAAACTTGGGCTTCTTTTGG
CTTCCAAAGGGGGGTCATCCATCACTTGGGGGCCACTCCCTTTCCAGGCC
CTCTTGTGGTGTCAGGGGGGCCCCCGGCCTTAAAAGAATGAAAAACAAGC
CCCCACCCTTAAAAATTTTCTTGGGGCCACAATTCCCCACCCAAAACAAA
GGGGGTTGGAAAAAGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_e22.g1 MSMg01no355_e22.g1 CHROMAT_FILE:
MSMg01no355_e22.g1 PHD_FILE: MSMg01no355_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:43 2005
         (451 letters)



>mm_chr18_88816354_88817204
          Length = 851

 Score =  694 bits (359), Expect = 0.0
 Identities = 368/371 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  ttatttgctcaatttttccactcttttgcagtttaggaatcccttcctagggaaagacag 140
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ttatttgctcaatttctccactcttttgcagtttaggaatcccttcctagggaaagacag 792

                                                                       
Query: 141 catccatactaggcagaatctatccacatagatttatttaattaagaaaattttccatag 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 catccatactaggcagaatctatccacatagatttatttaattaagaaaattttccatag 732

                                                                       
Query: 201 acatatttacaggccaacccaatgtagacagtctcccaataagattctcttcctaggtta 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 acatatttacaggccaacccaatgtagacagtctcccaataagattctcttcctaggtta 672

                                                                       
Query: 261 ttctaggtaataagttgtcaatagaagctaagttccataactatggagcttagagttcac 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttctaggtaataagttgtcaatagaagctaagttccataactatggagcttagagttcac 612

                                                                       
Query: 321 acagacatttcagtaacggtgggtgagtctttctctttcttcattcccagttcttgttta 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 acagacatttcagtaacggtgggtgagtctttctctttcttcattcccagttcttgttta 552

                                                                       
Query: 381 gatgccaatgtgactatcactaatgcttttgtggaggcttcttaaactcaatgctatatg 440
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 551 gatgccaatgtgactatcactagtgcttttgtggaggcttcttaaactcaatgctatatg 492

                      
Query: 441 cattctacaat 451
           ||||| |||||
Sbjct: 491 cattccacaat 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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