Query= MSMg01no355_k05.b1 MSMg01no355_k05.b1 CHROMAT_FILE:
MSMg01no355_k05.b1 PHD_FILE: MSMg01no355_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:08 2005
(578 letters)
>mm_chr18_88756044_88757021
Length = 978
Score = 862 bits (446), Expect = 0.0
Identities = 488/508 (96%), Gaps = 11/508 (2%)
Strand = Plus / Minus
Query: 1 aatgaacatctcacataagagatgagaaattcactttcttgagagtctcagtacaatagt 60
||||| ||||||||||||||||||| |||||||| |||| ||||||||||||||||||||
Sbjct: 501 aatgaccatctcacataagagatgacaaattcaccttctagagagtctcagtacaatagt 442
Query: 61 gttttaagaaggccagagtaatgcaaattactatgtatagatttttattttggtagagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gttttaagaaggccagagtaatgcaaattactatgtatagatttttatttttgtagagag 382
Query: 121 ttgttagaaaattgaaatataaccccctccatcctttacaatggtttacagtacactggc 180
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgttagaaaattgaaatataaacccctccatcctttacaatggtttacagtacactggc 322
Query: 181 cagaccagtgtgtggaccttatccaagaaaagcttctgggcttatttcagtagatcatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaccagtgtgtggaccttatccaagaaaagcttctgggcttatttcagtagatcatct 262
Query: 241 ggcaacacaaataactagtctcattattccaatatttttgacaaccaatcaaagtctttg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaacacaaataactagtctcattattccaatatttttgacaaccaatcaaa------- 209
Query: 301 gtctttgggtacagaaatttatcttaattcatgttggcttaagtctcttgtcatttttga 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 208 gtctttgggtacagaaatttatcttaattcatgttggcttaagtctattgtcatttttga 149
Query: 361 ttctcaatataataatgcagatatcttgagtaagaaatagctgtaggagaacagaagttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 148 ttctcaatataataatgcagatatcttgagtaagaaatagctgtaggagaacaaaagttc 89
Query: 421 tatctactcagaaa----aagtgagatttcaacttcatgtgatgttatttggcaaaaatg 476
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 tatctactcagaaaaagtaagtgagatttcaacttcatgtgatgttatttggcaaaaatg 29
Query: 477 taggcaagaaattcctatgagttatgat 504
||||||||||||||||||||||||||||
Sbjct: 28 taggcaagaaattcctatgagttatgat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_k05.g1 MSMg01no355_k05.g1 CHROMAT_FILE:
MSMg01no355_k05.g1 PHD_FILE: MSMg01no355_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:08 2005
(459 letters)
>mm_chr18_88582314_88583172
Length = 859
Score = 855 bits (442), Expect = 0.0
Identities = 454/458 (99%)
Strand = Plus / Plus
Query: 2 acacccctaagccccttgccccataaaaacccctagcttctgagcctcatggccgacatc 61
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 202 acacccctaagccccttgccccataaaaacccctagcttccgagcctcatggccgacatc 261
Query: 62 cgttatctcctgtgtgggatgcttgtcagtctggagctccaggattaaactgcctcatgt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cgttatctcctgtgtgggatgcttgtcagtctggagctccaggattaaactgcctcatgt 321
Query: 122 gattacagcaagatggattctcctgtttctttgggagctctctcactcctgagactagag 181
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 322 gattacagcaagatggattctcgtgtttctttgggagctctctcactcctgagactagag 381
Query: 182 tgggggttcctgaaagggggtcttacaaaggcaggtttattctaagcacctgaactagaa 241
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgggggttcccgaaagggggtcttacaaaggcaggtttattctaagcacctgaactagaa 441
Query: 242 ggcaagtatagctaatctcagtaggaagtctttgtaaggaaacagtttgaggttgctttc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggcaagtatagctaatctcagtaggaagtctttgtaaggaaacagtttgaggttgctttc 501
Query: 302 actcaggaggagaaatctgcggttgacatttctacacacatttgttttggctaaaggtca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 actcaggaggagaaatctgcggttgacatttctacacacatttgttttggctaaaggtca 561
Query: 362 gtgcatgggcagcactcatacttgctgacgaggaaggctttgccattcttatgagtctag 421
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtgcatgggcaacactcatacttgctgacgaggaaggctttgccattcttatgagtctag 621
Query: 422 gacactgggtccttgacatgactgtactcaaaccacat 459
||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gacactgggtccttgacatgactgtactcaaaccacat 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
