BAC Information

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BAC

Clone NameMSMg01-355K12
Chromosome18 (Build37)
Map Location 63,876,750 - 63,877,254
singlet/doubletsinglet
Overlap geneWdr7
Upstream gene2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik, LOC627792, Txnl1
Downstream geneLOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355K12.T7 (MSMg01no355_k12.b1)MSMg01-355K12.TJ (MSMg01no355_k12.g1)
ACCAG465992AG465993
length755767
length of high quality
(start - end)		591 (44 - 634)505 (76 - 580)
definitionCHROMAT_FILE: MSMg01no355_k12.b1 PHD_FILE: MSMg01no355_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:10 2005CHROMAT_FILE: MSMg01no355_k12.g1 PHD_FILE: MSMg01no355_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAAAATAGCAAACTCAAACCAACATCCGTCCTCAGCTATGAGGGAA
ATGGAAAGCAAATCTACTCTGAGATTTCATCTTACACCTGTCAGAAAGGC
TCAGATCAGAAACACAAGTGACGGCTCGTGGTGACAGGATTTGGAATAAG
GGAACACTCTTTCACTGCTGGTGGGAATGCAAACGTTTACACCAACTATG
AAAATCAGTGTGGCCCTTCCTCAGGAAGATAAGACTCAATCTACCTGAAG
ATTCATCTATACCTCTCTTGGGCATATACCCAAGTAATGGGGGAGACAGA
GTCCCAGCTGGACATAACTTTGTCCTTTCACACAGACCCTTGCTCAACCA
TGTTCACTGCTGCTTTATTTATAATAGCCAGAAACTGGAAACACCTAGAT
GTCTCTCAATGGAAGAATGGATAAACAAAATGTGGTATGTTTATACAGGG
AGTATTACTCAACTCTTTAAAAAAAAAAAATGAAATTCCCAGGTAAGAGG
ATAGGATGAGAAAAAGATAGTCCTTGGTGAAGTAATCCAGACCTTGAATG
ACAAATACGGTATGTGTTTGCTTATATGCAGATAGTAACTGTTAAATCAA
TGATACCAAGCTACAATCACAGAACCACAGAAATCACGTATAGGGTAGGG
AGAGTGGAGCGGGGTGCACAGCTATGTCTTCTTTTGGAAGGGTAATAGAA
TAGGN

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTATTAAGCTTAATACACCACCAGA
TTATTTTAGTCATTTGATTAATTGTTTTGCTCTTGACCTTTCCATGTATA
TATGAATATTTTCTTTTTGTTTCAGAGACTCCTGTGGTTTGGTTCATTTC
GATTCACTATAATAATTTTTGGGATATATTTCTTTTCAAGCACTAGATGA
TAATGTTGGCAATATGAAGCCTGGAGAATTAATAAATAAATTGACTAGTT
GAATGCTGGTGCTTGATTGAATAGTGACACCCCCTAAATTTATATTGCCC
CCTTTCTACTTTCTAGTGATAGCATTGGCTCATCAGTTCAGAGAAGTTCA
GATTTAGATTCTTGTGGTCTGATGATTAAATCTGTTTTAAACCCTGTGAT
CTAGTGACTAAGTCCAGTTAAATCTAGACTAATTGACTCATTTCTCATTT
TTAACCAGCTATAGAGAGATAGGTATATCCATAGAAGTATTTGATGTAAT
TTAGTGATGTACGTAAGGCACATTGTCCTTTATTTCATATTATTTCACTA
GTATTTCTGGGGGCTTTTCTATAAGTTCACTTTTATTTTATTAGACTTTT
TTTTTTATTGACTAATGGGTTAGTTTGAAAAAACCCCCTTCTTAATGAAC
CCTGTATTGTCAACAATAAAAAATATGGCCTCCTTTTTATAATTGGGGCA
ATTATTTTTTTTTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_k12.g1 MSMg01no355_k12.g1 CHROMAT_FILE:
MSMg01no355_k12.g1 PHD_FILE: MSMg01no355_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:10 2005
         (505 letters)



>mm_chr18_63876550_63877454
          Length = 905

 Score =  953 bits (493), Expect = 0.0
 Identities = 502/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctattaagcttaatacaccaccagattattttagtcatttgattaattgttttgctcttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ctattaagcttaatacaccaccagattattttagtcatttgattaattgttttgcttttg 260

                                                                       
Query: 61  acctttccatgtatatatgaatattttctttttgtttcagagactcctgtggtttggttc 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctttccatgtatatatgagtattttctttttgtttcagagactcctgtggtttggttc 320

                                                                       
Query: 121 atttcgattcactataataatttttgggatatatttcttttcaagcactagatgataatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcgattcactataataatttttgggatatatttcttttcaagcactagatgataatg 380

                                                                       
Query: 181 ttggcaatatgaagcctggagaattaataaataaattgactagttgaatgctggtgcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggcaatatgaagcctggagaattaataaataaattgactagttgaatgctggtgcttg 440

                                                                       
Query: 241 attgaatagtgacaccccctaaatttatattgccccctttctactttctagtgatagcat 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgaagagtgacaccccctaaatttatattgccccctttctactttctagtgatagcat 500

                                                                       
Query: 301 tggctcatcagttcagagaagttcagatttagattcttgtggtctgatgattaaatctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggctcatcagttcagagaagttcagatttagattcttgtggtctgatgattaaatctgt 560

                                                                       
Query: 361 tttaaaccctgtgatctagtgactaagtccagttaaatctagactaattgactcatttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaaaccctgtgatctagtgactaagtccagttaaatctagactaattgactcatttct 620

                                                                       
Query: 421 catttttaaccagctatagagagataggtatatccatagaagtatttgatgtaatttagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttttaaccagctatagagagataggtatatccatagaagtatttgatgtaatttagt 680

                                    
Query: 481 gatgtacgtaaggcacattgtcctt 505
           |||||||||||||||||||||||||
Sbjct: 681 gatgtacgtaaggcacattgtcctt 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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