BAC Information

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BAC

Clone NameMSMg01-356D15
Chromosome18 (Build37)
Map Location 54,394,581 - 54,603,400
singlet/doubletdoublet
Overlap genenone
Upstream geneGm1859, Snx24, Ppic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
Downstream geneEG545257, LOC100042489, Zfp608, LOC100043089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356D15.T7 (MSMg01no356_d15.b1)MSMg01-356D15.TJ (MSMg01no356_d15.g1)
ACCAG466421AG466422
length754768
length of high quality
(start - end)		570 (37 - 606)481 (68 - 548)
definitionCHROMAT_FILE: MSMg01no356_d15.b1 PHD_FILE: MSMg01no356_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:53 2005CHROMAT_FILE: MSMg01no356_d15.g1 PHD_FILE: MSMg01no356_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,603,093 - 54,603,400)(54,394,581 - 54,395,061)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATG
AGCTTACATTTTATTTCAAGCTTTGGGAAATTCCAAACCCATAGGAGGAA
TCCTATGCTATCAGTATATCAGAGGGAGGGGTTTATATTGACTGGCTGGC
TAGTTTTATATCGACTTGACCCAAGTGAGTCTCTTGTGCTGAAATATGAA
CTTGGTATTATAAGAGTCACCCAGGTAGTACAGGTTTTCACGGCATGAAG
GAGTCAATATTTTGGAGGTACCAGTACCATGGGAGGACCATCAAGAACAG
CAGCAGCAGCAGCGTGGAGCCAGTTGGAGCCTAGAAGAGAAGCCATGTGT
TATGCAGAGGGTGAAGCTGGACAAGTGACCTAAACTTTTTGGAGGAACAC
AGAGGGTTATGAAGGGATGTCAGATGTTGGATACTGAGTTATTTACAGTT
AGAGTTTGGTTTGGATTAGTTCAGAAGGTGTCTGTGCTCGGGTTCTTTCA
ACTTGAAGTAAGAAAGCATTTAACTTATTTTTTTTGTTTGTTTTGCTTTT
GTTTTATATGAGCTCACAGTTGAGAGACACTACATTTTAAGACTTTAGAC
TTTTTAACGGAGACTGAATATTTTAAAGAAAGTGACATTTTAAGTGTTTG
AACTTTTGAAGGCTATGGGACTTTTTAAGCTTGTAAGATATTTTATATTG
TCCTTTCAATATTAATGTTTCATATTTAGGGTTGAACACCTACAAAGTAA
AGGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCCGAGCAGCTCTCAAGTTTCCTGCAGTCTGC
TGTTAAGAAGTCTCTTTTTCCCTGACGGAGCTGCCAGAGTCCAGTTAGCG
CCTGGTCAGTCTCCCTCAGTCATTAATGAACTGCCCCAGAAGACCATGTT
CTTCTCTGCTGTCAACTGCCCAGGAAACTCCAAGAATTATTTCTTTCAGA
CATCCTCCGGCTTTCTAGAGATGCACCTCCTAATTTAGTGGTATCTATTT
ATTTCCCAGGAAAACTTGGAATCAGAGACGATGTGAACTGAAACACATTT
CATTATGACTGACTGCTAAATAACATGCAGGGAAATGGTCAGAAAGGAAA
CCCAGCATTGCTGATGCTGGCCTTCATTCTTCTTGTATTTTTTTTAAACT
TGCTTCCAACTCCCTTGCTTATCAAAGACTGTGTAGGTTTTCTTCCCTGC
TCACTTCTACCATCCCCCTGCAATTTAATTGGACTGCTTTCTCACCTTAT
ACACACTGTTCACTCCCTCGGCATGGNCTGCCCTTTTCTTCTTGCAGGAA
CGAATATAGATGGGCGAGGATTTTTTTTGAATCCCCTTTGTCTCTCCTGA
TATTGACCCTCTTTCTCTCTTTTTCAAAAAACTTAATTCTTCCGGTCCCT
TTTGTCCCATCCGTTTTTTTCAATTCTTCCGCCTTTGGCTTTCCCCCCAC
ATTATATATTTGCGGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_d15.b1 MSMg01no356_d15.b1 CHROMAT_FILE:
MSMg01no356_d15.b1 PHD_FILE: MSMg01no356_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:53 2005
         (570 letters)



>mm_chr18_54603093_54604062
          Length = 970

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatgagcttacattttatttcaagctttgggaaattccaaacccataggagga 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggaattctatgagcaaacattttatttcaagctttgggaaattccaaacccataggagga 249

                                                                       
Query: 64  atcctatgctatcagtatatcagagggaggggtttatattgactggctggctagttttat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atcctatgctatcagtatatcagagggaggggtttatattgactggctggctagttttat 189

                                                                       
Query: 124 atcgacttgacccaagtgagtctcttgtgctgaaatatgaacttggtattataagagtca 183
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 188 atcgacttgacccaagtgagtctcttgtgctgaaatatgaacttggtattgtaagagtca 129

                                                                       
Query: 184 cccaggtagtacaggttttcacggcatgaaggagtcaatattttggaggtaccagtacca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 cccaggtagtacaggttttcacggcatgaaggagtcaatattttggaggtaccagtacca 69

                                                                       
Query: 244 tgggaggaccatcaagaacagcagcagcagcagcgtggagccagttggagcctagaagag 303
           ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 68  tgggaggaccaccaagaacagcagcagcagctgcgtggagccagttggagcctagaagag 9

                   
Query: 304 aagccatg 311
           ||||||||
Sbjct: 8   aagccatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_d15.g1 MSMg01no356_d15.g1 CHROMAT_FILE:
MSMg01no356_d15.g1 PHD_FILE: MSMg01no356_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:53 2005
         (481 letters)



>mm_chr18_54394381_54395261
          Length = 881

 Score =  915 bits (473), Expect = 0.0
 Identities = 479/481 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccgagcagctctcaagtttcctgcagtctgctgttaagaagtctctttttccctgacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccgagcagctctcaagtttcctgcagtctgctgttaagaagtctctttttccctgacg 260

                                                                       
Query: 61  gagctgccagagtccagttagcgcctggtcagtctccctcagtcattaatgaactgcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctgccagagtccagttagcgcctggtcagtctccctcagtcattaatgaactgcccc 320

                                                                       
Query: 121 agaagaccatgttcttctctgctgtcaactgcccaggaaactccaagaattatttctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagaccatgttcttctctgctgtcaactgcccaggaaactccaagaattatttctttc 380

                                                                       
Query: 181 agacatcctccggctttctagagatgcacctcctaatttagtggtatctatttatttccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacatcctccggctttctagagatgcacctcctaatttagtggtatctatttatttccc 440

                                                                       
Query: 241 aggaaaacttggaatcagagacgatgtgaactgaaacacatttcattatgactgactgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaaaacttggaatcagagacgatgtgaactgaaacacatttcattatgactgactgct 500

                                                                       
Query: 301 aaataacatgcagggaaatggtcagaaaggaaacccagcattgctgatgctggccttcat 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 aaataacatgcagggaaatggtcagaaaggaaacccagtattgctgatgctggccttcat 560

                                                                       
Query: 361 tcttcttgtattttttttaaacttgcttccaactcccttgcttatcaaagactgtgtagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttcttgtattttttttaaacttgcttccaactcccttgcttatcaaagactgtgtagg 620

                                                                       
Query: 421 ttttcttccctgctcacttctaccatccccctgcaatttaattggactgctttctcacct 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ttttcttccctgctcacttctaccatccccctgcaatttaattggactgccttctcacct 680

            
Query: 481 t 481
           |
Sbjct: 681 t 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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