BAC Information

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BAC

Clone NameMSMg01-356F10
Chromosome18 (Build37)
Map Location 68,759,242 - 68,759,675
singlet/doubletsinglet
Overlap genenone
Upstream geneCep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356F10.T7 (MSMg01no356_f10.b1)MSMg01-356F10.TJ (MSMg01no356_f10.g1)
ACCAG466504AG466505
length773755
length of high quality
(start - end)
473 (42 - 514)434 (57 - 490)
definitionCHROMAT_FILE: MSMg01no356_f10.b1 PHD_FILE: MSMg01no356_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:02 2005CHROMAT_FILE: MSMg01no356_f10.g1 PHD_FILE: MSMg01no356_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTAGGTGTCCTTTTGTATTCCTCAGTTGAGAATTCTCTGTTTAGCTCT
GTTCCCCCCCCCTTTTTTTTTTTCGAGCAGGGTTTCTCTTTATAGCCCTG
GCTGTCCTGGAACTCACTTTGTAGAACAGGCTGGCCTCAAACTCAGAAAT
CTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGAGTGTGCCACCAC
GCCCGGCTTCTGTTCCCCATTTTTAAATAGGGTTATTTGGTTCTCTGGAG
TCTAACTTCTTGAGTTCTTTGTATATATTGGATAATAGCCCTCTATTGGA
TGTAGGGTTGGTAAAGATCTTTTCCAAGTCTGTTGGTTGTTGTTTTGTTC
TAGTGACAATGTCCTTTGCCTTACAGAAGCTTAGCTATTTTATGAAGTCT
CATTTGTCAATTCTTGATCTTAGAGCATAATTCATTGGTGTTCTGTTTAA
AAACTTTTCCCCTGTGCCCATGTGTTTGAGACTTTTTCCCCATTTTCTCT
TCCATTATATTCAGTGTATCCTGCTCTATGTGGCGGTCCCTGACCCCCCT
GTTCTCGCGCTTTGTACCATGCCAATAATATTGGTCCCATTCTCTTTTTT
TTCCATACGTTGGTCACACCTTTCTTACTATTCCCCCTTTGTTTACTCGG
ATGTGCCTTCTTACCTCGGCATGTATCCAACCGTTTCTACCCTCCACATT
TTATATCGCTCCTACACTATCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCACACTAGTGTCCAGGAGACCCTGTGAGCTATGTTCCTTTCATC
TGTCTCATAAGTAAGGATTACATCATGAAGACCTGTAGTAATAACCTGTT
CAGATTCAAGAACCTCATTCCTAGCCTGAAGAGAGGGAGCCTGAACAGTG
GAGGCCACAGATAATCACGGAACTAAATATGGAACTCAAGTACCAAAAGC
CAGTATGAAACGTGTTGCTTTTCTTCTTAGAGCAATGTCGTTTTGTAGTC
ATTTGGTCTTTGAGGACAAATCTAGGTAATTCAAGGAGACATGTTCTAGT
GCAGAGCCCTCTAGATGGAGACTCGCTGCAAAGACATGTAAGCTTTATGA
CAGCTCAGACTTCTTTCGTATTTATTTTTATAACCTTGGTACCCAGAATA
GCACCCGGCACAAAGCAAGCGCCCAGCACAGGCATATGGTAACTACATAA
AGAGTTTACTGTTATTATTGTTATTGATCCCCCTGTTTCATCCTTTGTTA
GGGGAGCTATCAGCAGTTTCCACCTGGAATAACGTTAGCCAAGAAATCTT
GAATTTTCTTCCCCTCCCGCAAAAAGGGGTTTTCTCATGGTCTCCCCTAC
GCTTGACTTTTTTTGATTCTCTAATACATCCCGTTACCGTTTGATATTTC
CATTTTTTTTTTATTCTCATTCCTTTATTTCCCCCTCTTCTCTCTTGTTT
TTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_f10.g1 MSMg01no356_f10.g1 CHROMAT_FILE:
MSMg01no356_f10.g1 PHD_FILE: MSMg01no356_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:02 2005
         (434 letters)



>mm_chr18_68759147_68759980
          Length = 834

 Score =  746 bits (386), Expect = 0.0
 Identities = 422/434 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacactagtgtccaggagaccctgtgagctatgttcctttcatctgtctcataagtaagg 60
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 529 cacactagtgtccaggagaccctgtgagctatgttccttttagctgtctcataagtaagg 470

                                                                       
Query: 61  attacatcatgaagacctgtagtaataacctgttcagattcaagaacctcattcctagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 attacatcatgaagacctgtagtaataacctgttcagattcaagaacctcattcctagcc 410

                                                                       
Query: 121 tgaagagagggagcctgaacagtggaggccacagataatcacggaactaaatatggaact 180
           |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct: 409 tgaagagagggagcctgaacagtggaggccacggacaatcacggaactaaatatagaact 350

                                                                       
Query: 181 caagtaccaaaagccagtatgaaacgtgttgcttttcttcttagagcaatgtcgttttgt 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 349 caagtaccaaaagccagtatgaaacgtgttgctcttcttcttagagcaatgtcgttttgt 290

                                                                       
Query: 241 agtcatttggtctttgaggacaaatctaggtaattcaaggagacatgttctagtgcagag 300
           |||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 289 agtcgtttggtctttgaggacaaatctaggtaactcgaggagacatgttctagtgcagag 230

                                                                       
Query: 301 ccctctagatggagactcgctgcaaagacatgtaagctttatgacagctcagacttcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ccctctagatggagactcgctgcaaagacatgtaagctttatgacagctcagacttcttt 170

                                                                       
Query: 361 cgtatttatttttataaccttggtacccagaatagcacccggcacaaagcaagcgcccag 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 169 cgtatctatttttataaccttggtacccagaatagcacccggcacaaagcaagtgcccag 110

                         
Query: 421 cacaggcatatggt 434
           || |||||||||||
Sbjct: 109 caaaggcatatggt 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)