BAC Information

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BAC

Clone NameMSMg01-356F16
Chromosome18 (Build37)
Map Location 3,980,867 - 3,981,337
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273, LOC435549
Downstream geneEG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356F16.T7 (MSMg01no356_f16.b1)MSMg01-356F16.TJ (MSMg01no356_f16.g1)
ACCAG466516AG466517
length766776
length of high quality
(start - end)		474 (36 - 509)499 (76 - 574)
definitionCHROMAT_FILE: MSMg01no356_f16.b1 PHD_FILE: MSMg01no356_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:03 2005CHROMAT_FILE: MSMg01no356_f16.g1 PHD_FILE: MSMg01no356_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTCT
CTGCCTACAGTCTTGATGCAGATGTACTGGAGTTATAGACCTGTACTTAC
TGTGGCCTTTGGATGAGTCCTTGACCCCCATTCAGGTCCTCACCCTTACA
TAACGAGTGCTTTGCCCACTAGACCATCTTTCCAGCTCCTATGACAACTT
TTAATTTCTGGGCTGAGCCCTCAGTTCTGGAGGCCCTCTCCCTCCCTCCT
GTTGATTTGTTATTGCTGTTGCTCAGGCTAGTCTCTAACTTCTGGGCTCC
AACTATCCTTCTGCCAAGCTTCCTTAGCAGCAGTAACTATAGGCATCCCA
CTCCAACTTCTCTGTACTTCTAGAGCGAGAAAGAGGGGTGGTTTGGGGGA
AGGGGGAGGACATGGAGACACAGAAGTGGGGGAAGAATGATAAAACTGAA
TGAAAAGAAGACTATGTTATCTTGGTGCTGGGGATCAAACCCAGCATTTC
CCATATGCTAGGTAGGTGCTCCACCACCATGCTACATCCCTAGCCTGAGG
ACTTACTTCATTTTAATGATGCCAGCCTGATAACCTATCTCATTTAAATG
AAGCCAGTTTGCCTTTGGCCTGTGAAAATACTCTTTCTGTGGGGATCTCA
TTTCTTAGCATGCCTCGCTTCCCCCGTAAGCCTGATGGCGTTAAGGCTGT
TGAAAACGCACTCTTTATCCACACTTGCACTTTTTGCACCGACTTCTTAT
TGTCGGGCCCTCCTCG

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATAAAGAATGGCTG
AGAAGCCCCTGAAAAAATGCTCAGCATTCTTAATCATCAGAGAATTGCAA
ATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGTATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAAAGGAA
TACTCCTTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
CAAAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCAGTAAGA
AGGGCACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAAT
GTGGTACATTTACACAATGGAGTACCACTCAGCTATTAAAAGGAATGAAT
TTATGAAATTCCTAGGGAAATGGTTGGACGTGGAGGGCATCATTCTGAGT
GAGGGCACCAATCCCAAAAAAATCACATGATATGTACTCCCTGATAAGGG
ATATAACCCCCAAACTTATTATTTCTGAAAATTAAAAACAATTGTTTATA
CCCGTAATTGAAAAAAAGATAACCAAGGGGGGTACTTTCCCCTCCTTAAT
TGTGAAAACCCCCTTTCGGATTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_f16.b1 MSMg01no356_f16.b1 CHROMAT_FILE:
MSMg01no356_f16.b1 PHD_FILE: MSMg01no356_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:03 2005
         (474 letters)



>mm_chr18_3980513_3981386
          Length = 874

 Score =  888 bits (459), Expect = 0.0
 Identities = 468/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtctctgcctacagtcttgatgcagatgtactggagttatagacctgtactt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ggaattctgtctctgcctacagtcttgatgcagatgtactggagttatagacctgtactt 766

                                                                       
Query: 64  actgtggcctttggatgagtccttgacccccattcaggtcctcacccttacataacgagt 123
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 765 actgtggcctttggatgagtccttggcccccattcaggtcctcacccttacataacgagt 706

                                                                       
Query: 124 gctttgcccactagaccatctttccagctcctatgacaacttttaatttctgggctgagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gctttgcccactagaccatctttccagctcctatgacaacttttaatttctgggctgagc 646

                                                                       
Query: 184 cctcagttctggaggccctctccctccctcctgttgatttgttattgctgttgctcaggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cctcagttctggaggccctctccctccctcctgttgatttgttattgctgttgctcaggc 586

                                                                       
Query: 244 tagtctctaacttctgggctccaactatccttctgccaagcttccttagcagcagtaact 303
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 585 tagtctctaacttctgggctccaactatctttctgccaagcttccttagcagcagtaact 526

                                                                       
Query: 304 ataggcatcccactccaacttctctgtacttctagagcgagaaagaggggtggtttgggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ataggcatcccactccaacttctctgtacttctagagcgagaaagaggggtggtttgggg 466

                                                                       
Query: 364 gaagggggaggacatggagacacagaagtgggggaagaatgataaaactgaatgaaaaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaagggggaggacatggagacacagaagtgggggaagaatgataaaactgaatgaaaaga 406

                                                              
Query: 424 agactatgttatcttggtgctggggatcaaacccagcatttcccatatgct 474
           |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 405 agactatgttatcttggtgctgggaatcaaacccagcatttcccatatgct 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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