BAC Information

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BAC

Clone NameMSMg01-356P16
Chromosome18 (Build37)
Map Location 84,741,756 - 84,742,017
singlet/doubletsinglet
Overlap geneZfp407
Upstream geneTshz1, Zadh2, LOC669856
Downstream geneCndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356P16.T7 (MSMg01no356_p16.b1)MSMg01-356P16.TJ (MSMg01no356_p16.g1)
ACCAG466991AG466992
length767767
length of high quality
(start - end)
430 (37 - 466)264 (77 - 340)
definitionCHROMAT_FILE: MSMg01no356_p16.b1 PHD_FILE: MSMg01no356_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:51 2005CHROMAT_FILE: MSMg01no356_p16.g1 PHD_FILE: MSMg01no356_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCT
TTACTCGCTCAGAATTATGGGAACCAAAGAGCAGTTTGTAATCGAACCTT
TGTTCAAAAACACTCTTTAGGTGAACTGGGGAGATGGAGAAGGTGGTAAA
GTCATGCAAGCTTGAAGTCTCAAATTCAAATCCAAAGGACCCAAGTAAAA
AGCCAGATGTCTGTACCTGTAGTCCCAGTGTTTCAGGACCAGGAAGATCT
TCCAACACTCTGGTCAGCCAGTATAGCCAAACCGGTGAGCTCTGGACTCA
GTGAGAAAACTTGTCTTATAAATTAAGGTGGAAGGCAGGCCTGGTGGTAC
ATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGT
TCGAACCCACCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATA
CAGAGAAATCCTGTCTCGAAAAAAAGACCAATAAAGGATAGGAAAGGAAA
GGAAAGGAAAGGACAGGATAGGAAAGGAATAGGATAGGACAGGACCGCTT
AGGATACGATCTTAATCTTACGATTATCCCAGTATATCAATCACTCCGAT
TCCCTTTTCCCCCCTCATTTCCTAATCATATCTTTATATCCACCCTATCT
TACTACCCCTTCTTCCCTTTCTGTCTTGTTTTCCTTCCCGTTTTTATTGT
CCTTATGCCACTTTACACCACTTCATCCTTCTTTCTACCCTCACCGTTTT
TTTCGTTCTACCTTTGC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTAGTTAGACTCAGAAATTT
AGCATTCCCAAACTGGAGGAGCAGTTCACATGGGGAATACAGGCCATACA
TAGTCCATTGGTTACTGTCACTACACAATTAACTCTAAACCTACTGATAT
TGGAAAGCATTCAAGCTTAGGGGATATAGAGTCACTCGTTCAGCATACAG
CCTGTGAAAGTGCTACCACTAACATATCAGACATGCCATTTCTAGCTCTA
TACAAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNNN
NNNNNNTNNNNNNTNNNTNNNTTTTTTTNTTTTTTTTNTTTTNNNNTNNT
TTTTTTTTTTTTTTTNTNTTTTTTTTNCCTTTTTTTTTNNTNTTTTTTTN
NNTTTTTTTTTTTTTNTTNNTTTTTTTTTTTTNTTTTNTTTTTTTTTTTC
TTTTTTGNTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_p16.g1 MSMg01no356_p16.g1 CHROMAT_FILE:
MSMg01no356_p16.g1 PHD_FILE: MSMg01no356_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:51 2005
         (264 letters)



>mm_chr18_84741556_84742219
          Length = 664

 Score =  499 bits (258), Expect = e-146
 Identities = 261/262 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctagttagactcagaaatttagcattcccaaactggaggagcagttcacatgggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttctagttagactcagaaatttagcattcccaaactggaggagcagttcacatgggga 260

                                                                       
Query: 61  atacaggccatacatagtccattggttactgtcactacacaattaactctaaacctactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacaggccatacatagtccattggttactgtcactacacaattaactctaaacctactg 320

                                                                       
Query: 121 atattggaaagcattcaagcttaggggatatagagtcactcgttcagcatacagcctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattggaaagcattcaagcttaggggatatagagtcactcgttcagcatacagcctgtg 380

                                                                       
Query: 181 aaagtgctaccactaacatatcagacatgccatttctagctctatacaaggaggaggagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtgctaccactaacatatcagacatgccatttctagctctatacaaggaggaggagg 440

                                 
Query: 241 aggaggaggaggaagaggagga 262
           ||||||||||||| ||||||||
Sbjct: 441 aggaggaggaggaggaggagga 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)