BAC Information

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BAC

Clone NameMSMg01-357D01
Chromosome18 (Build37)
Map Location 75,389,182 - 75,389,733
singlet/doubletsinglet
Overlap geneDym
Upstream geneEG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, LOC628356, EG667777
Downstream geneSmad7, Gm672, Zbtb7c, 4833419G08Rik, LOC668184
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357D01.T7 (MSMg01no357_d01.b1)MSMg01-357D01.TJ (MSMg01no357_d01.g1)
ACCAG467152AG467153
length745834
length of high quality
(start - end)
555 (68 - 622)154 (73 - 226)
definitionCHROMAT_FILE: MSMg01no357_d01.b1 PHD_FILE: MSMg01no357_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:07 2005CHROMAT_FILE: MSMg01no357_d01.g1 PHD_FILE: MSMg01no357_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTCAAAGTATTCAGCCAGTCAAACTGATCACAGGGACGAGCCATCAC
AGCTGTGAACTCTGAGGAGACAGTGACAGAAACACGGGCTAATGTATGAC
GTTCAGATGGTGGTGCAGCCCACGGGGGTGTGTCCTGACGTGATCACTTT
TCTTGTAGTGGCTAAGACTTCGGGACTGGCTACGCTGTGGCCGTCTAATG
ATTTAGGCAGAGAATACCAATAAGGATCTGCAAGCGGGAGCCAAATGGCC
TGCACGTTTTCCTCTGTATTGGCTAATACCTAACTTAGTATATAAGTTTT
AACTTTCATCCCTTAGTAACAGATGAACCTAACTTTAAAATTCTTGACAA
GCTCTTGAAGGCCATACCTGTGTAATCTTTCCAGTGCTTTTGAAATTGTC
ACTGTCACTTGCATTTCGGTTACTTCTGTGGCAGGGACCAAAACACTGAC
TGCTTGTTGGGGTTTCCTTTCTTCACAAGGCACAGGACCTCAGTGTCATT
GAAGAAGTGATTCGGATGATGCTGGAGATCATCAACTCCTGCCTGACAAA
TTCTCTTCACCACAACCCACACTTGGTGTACGCCTTGCTTTACCAACGGG
ACCTCTTTGAGCCATTCCGAATTCATCCCTTATTCCAGGACATAATGCTA
AACATTGACCTGTTGACTGTGTTCATAGGCCCTCTAGTCTCTGTN
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGTATGAGAGAATTTGTGTGTGAGAG
ACAATTCTCTGTGTGAGAGACAGTTCTGTGTATATGTGTGAGAGAGGATT
CTGTGTGAGAGAGAATCTGTGTGAGAGAAAATGCTGTGTATGAGAGAGAA
AGAATGGCTGTTGGTGGGTGTGTTTAATAAACTAAGACTACGGCGAGAAT
TTTATTGGTGATAAACAGTAAGTTCATGACCTCAGTGATCATGATCTTTG
AACCCATGTTCATGAGTAGACGTCTTTTGTTACAGGTCTGTTTTTTTAGC
ACGCCCTTGCTGCCTTTGTAGTTATTATATCTTTTTCCTACGGTTAATCC
TAGTCACGCTCCTGATCTTAATATTCGCCCTTTACCTTTTTTTCTTTTTT
TGTATGTCACCTTTTCTTCTCCCTTTGTTTCCCCTTTTCTTATTTAAACC
TGTTTCCTCTTTTCTATTTTTGCTCTCCTCTTCTTACCCTTATTTTTCTT
CTGTTTTCCCCTCTCTTTTTATCCCGTCTGTTTATTTTTTTTCCACCCTA
CCTCCCTTCTTTATCTCCCCCCTTCCCCCTTTTTCTTCGATATTTTTTCC
CCTTTCCTCCTGTGCTCATTCTCATCTTTCTCTTACCTCCTCTCATTCTT
TCATTTTTTTCCCTTTCTTTCCTCCACTCGTTTTATCTCTCCACTTTTCT
CCCTTCGGTCTCTTTTCTATTTTTCTCGCCCTTCTTTGGTCTTCTTATCC
TTCCGTTCCACCCTTCCTTCCTTTTCCATCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_d01.b1 MSMg01no357_d01.b1 CHROMAT_FILE:
MSMg01no357_d01.b1 PHD_FILE: MSMg01no357_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:07 2005
         (555 letters)



>mm_chr18_75388982_75389936
          Length = 955

 Score = 1060 bits (548), Expect = 0.0
 Identities = 551/552 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagtcaaactgatcacagggacgagccatcacagctgtgaactctgaggagacagtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagtcaaactgatcacagggacgagccatcacagctgtgaactctgaggagacagtgac 260

                                                                       
Query: 61  agaaacacgggctaatgtatgacgttcagatggtggtgcagcccacgggggtgtgtcctg 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaacaagggctaatgtatgacgttcagatggtggtgcagcccacgggggtgtgtcctg 320

                                                                       
Query: 121 acgtgatcacttttcttgtagtggctaagacttcgggactggctacgctgtggccgtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgtgatcacttttcttgtagtggctaagacttcgggactggctacgctgtggccgtcta 380

                                                                       
Query: 181 atgatttaggcagagaataccaataaggatctgcaagcgggagccaaatggcctgcacgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgatttaggcagagaataccaataaggatctgcaagcgggagccaaatggcctgcacgt 440

                                                                       
Query: 241 tttcctctgtattggctaatacctaacttagtatataagttttaactttcatcccttagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcctctgtattggctaatacctaacttagtatataagttttaactttcatcccttagt 500

                                                                       
Query: 301 aacagatgaacctaactttaaaattcttgacaagctcttgaaggccatacctgtgtaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagatgaacctaactttaaaattcttgacaagctcttgaaggccatacctgtgtaatc 560

                                                                       
Query: 361 tttccagtgcttttgaaattgtcactgtcacttgcatttcggttacttctgtggcaggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttccagtgcttttgaaattgtcactgtcacttgcatttcggttacttctgtggcaggga 620

                                                                       
Query: 421 ccaaaacactgactgcttgttggggtttcctttcttcacaaggcacaggacctcagtgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaaaacactgactgcttgttggggtttcctttcttcacaaggcacaggacctcagtgtc 680

                                                                       
Query: 481 attgaagaagtgattcggatgatgctggagatcatcaactcctgcctgacaaattctctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attgaagaagtgattcggatgatgctggagatcatcaactcctgcctgacaaattctctt 740

                       
Query: 541 caccacaaccca 552
           ||||||||||||
Sbjct: 741 caccacaaccca 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)