BAC Information

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BAC

Clone NameMSMg01-358B02
Chromosome18 (Build37)
Map Location 90,621,627 - 90,621,973
singlet/doubletsinglet
Overlap geneLOC665526
Upstream geneDok6, LOC383320, LOC620693, Eif3s6-ps2
Downstream geneTxndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358B02.T7 (MSMg01no358_b02.b1)MSMg01-358B02.TJ (MSMg01no358_b02.g1)
ACCAG467813AG467814
length716747
length of high quality
(start - end)
254 (34 - 287)347 (65 - 411)
definitionCHROMAT_FILE: MSMg01no358_b02.b1 PHD_FILE: MSMg01no358_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:15 2005CHROMAT_FILE: MSMg01no358_b02.g1 PHD_FILE: MSMg01no358_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATTT
TTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTGTCAAAATCTTTCT
CAGCATCTAATGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATA
TAGAGGATTACATTGATGGATTTCTGTATATTAAAGCATCCCTGGAAGGA
AGCCTACTTGATCATGATGAATGATTGCTTTGATGTGTTCTTGGATTCTG
TTTGCAAGAATTTTATTGAGTATTTTTGCATGATATTCATAAAGGAAATT
GGTCTGAAGTTCTCTTTCTTTGTTGGGTCTTTGTGTGGATTAAGTATCAG
AGTATGTGTGGACTCATAGACTGAATTGCTAAGAGCACCTTCTGTTTCTA
TTTTCTGAAATAATTTGAGGACAATTGGAATTAAGCCTTCTTTGAATGTC
TGAAAGAATTCTGCACTAGAACCATCAGACTCTGAGCTGGTTATTTTGCT
CAGGAGACTATAATATTTTAATGAACATGAATCCTCTTGTACACAAGCCC
ATGGGACACAATAGAATTCTTTCTCTATACGGAAAGTCATAGATCTGAGA
GGCTCCGTACAAAACTGGTGACATACGCACTAGACATTTTGCACTCATCC
TAGTACTCTATAATATATGTTAAAAATTGCCCCCCCAGACTACATGATTT
TGACTCTCCATCCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACTCTTTCCTGAGCTTGGCAATTTGCGGAACTATT
GAATTATGTTTGGAATTCAGTCTTGGGACCTCTTTGTATTATTGTTTAAA
TGGGGTGTCAGAACTGGTCCCACTTTCCTTAGGAATAGATGCAACTTCTG
AAACCAGGAACAATACTTCTGCTGGCTTAGAAGATTATCATTACTGGTCT
TCAGAAGTTTGTGGAGGGTTTACTGGCTTCTTTCAGGTGGTCCTTTGGAG
GCATGGGCTGTGGTCACATTGAGAGTAGGGCATACTTCATCAGGGAGAAT
GCAGGTTGATACAGTGTCTTAAGGTAGAGTTGGGTTAGGTGGGGGCCAGA
CTGGGTGTCCATATCTGTGGTCAGACTCTGGATTTCATGGGTTCCCAAGG
CGCCTTTGTTGGTTCATTGACCGACTGGCTTTGCGTTTCCCTTTTTGTTT
TTACGCCCCCCCAATGCCTTTTGTTCTCTTGTTTCCCCCGCCCATGACCC
GCCCCTGTTTCCAATTTTTCCATTATTCCGTTTGACCTCTTTTTTTACCT
TTTTTCCCCCTTTTTCCCCCCGCTGTTTTCCTCATTTTTTCTCCTGACTC
GCGCTATCCCTTCGTTTTTTCCCACCTTTTTCACCCTTTTTTTTCCCTTT
TTCCATCTCCCCTTCTCCACACTTTTCACAATTCTACACTCATTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_b02.g1 MSMg01no358_b02.g1 CHROMAT_FILE:
MSMg01no358_b02.g1 PHD_FILE: MSMg01no358_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:15 2005
         (347 letters)



>mm_chr18_90621427_90622173
          Length = 747

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctttcctgagcttggcaatttgcggaactattgaattatgtttggaattcagtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cactctttcctgagcttggcaatttgcggaactattgaattatgtttggaattcagtctt 488

                                                                       
Query: 61  gggacctctttgtattattgtttaaatggggtgtcagaactggtcccactttccttagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gggacctctttgtattattgtttaaatggggtgtcagaactggtcccactttccttagga 428

                                                                       
Query: 121 atagatgcaacttctgaaaccaggaacaatacttctgctggcttagaagattatcattac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atagatgcaacttctgaaaccaggaacaatacttctgctggcttagaagattatcattac 368

                                                                       
Query: 181 tggtcttcagaagtttgtggagggtttactggcttctttcaggtggtcctttggaggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tggtcttcagaagtttgtggagggtttactggcttctttcaggtggtcctttggaggcat 308

                                                                       
Query: 241 gggctgtggtcacattgagagtagggcatacttcatcagggagaatgcaggttgatacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gggctgtggtcacattgagagtagggcatacttcatcagggagaatgcaggttgatacag 248

                                                          
Query: 301 tgtcttaaggtagagttgggttaggtgggggccagactgggtgtcca 347
           ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 247 tgtcttaaggtagagttgggttaggtgggggtcagactgggtgtcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)