BAC Information

Click to search

BAC

Clone NameMSMg01-360A23
Chromosome18 (Build37)
Map Location 52,281,251 - 52,281,366
singlet/doubletsinglet
Overlap genenone
Upstream genePrr16, EG240289
Downstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360A23.T7 (MSMg01no360_a23.b1)MSMg01-360A23.TJ (MSMg01no360_a23.g1)
ACCAG469326AG469327
length7551,291
length of high quality
(start - end)		608 (43 - 650)---
definitionCHROMAT_FILE: MSMg01no360_a23.b1 PHD_FILE: MSMg01no360_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:42 2005CHROMAT_FILE: MSMg01no360_a23.g1 PHD_FILE: MSMg01no360_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAA
TTCAGCATCAGTGTTCATTTTTTGGCTGTCAGCGAACTAGGCAAAAAAGT
GGCATGTGTAGGGACATCTTTTCATAAAAGGTCAAAGAACGCATTGTCTG
AATGTGAGAGTGTGGTCAGAGGTCTGAGAATGTCCTGAACAATAAAGAAA
AAGTTAAGAGAGAAAAACACTTGGCATATGAAAGACGAAAATATCACAAG
GGAGCAGGGTAGCAGCAACAACTCTTGTAAGTTGAAGGGGTCATGAAAGA
CAGGTACTAAAACTCCTCTGATTCTGAAAGTAGGACACTGATGAACTGGG
GGTGAAAAGAGGAAGTGCCATGGAAGCCTGACATCAGCAAAGTTAAGACA
TATGTGTTGTAGTTTACGTGATACTTTCAGAAGAATTGTGTCATCCATAT
GCAATGTGTCTGGGTTTGGTGGCTGATTATGAGATGGATTCCCGGGTGGG
GTATGAAGGGACCCTGTTATAGCTGTCTCATATGAGGCTATGCCAGTGCC
TGGCAAATACAGAAGTGGATGCTCACAGTCATCTATAAGATGGAACGCAG
GGCCCCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGGTCT
GCAACCCTATAGGTGGAACAACAATGTGAACTAAACAGTACCCCCAGAGC
TCATATCTCTAGCTTTCTAGGTAGCAAAAGAAAGGCCTATTCGGCCATCA
CTGGG

CTCCCTTTCCTCCCCCTTCGTCGCGGTGCGTCCTCTTTATTGCTCGCANA
CAATAAATGCGCGGATACTACGATTTAGGCGCCCGCCACACAAACTATCG
ACATAACGTCGTGCGTGACGCATAACATAAGTGTACTTGACTTGTACCGT
GTATTCCGCGATTTTCCTGTATTTACTCTTATACCCTGATCGCTTGACGG
TAATTACTTGCCAGCTCTTATACACCATAGTGCGGCTGTTGAATGACGGT
GATACAGAGGTACTATGTCATCTGGAGAGCGTTCGCTTTGTGTACCATCT
GGCCCGTTTACTACTCTTCCTGCCTAGAATTATCGCGAGACGCGAGAGTT
TGGAGCCGCTCGCTTATATTGCGTGCGCCGATATGTACCGTATCGCAGAG
AAGCTAGTCATTGTTACTAGCATATATATATGACGACGATACACTTCGCC
GATGATCAGCGCATATGAATATGTGATATCAATGATCACGCGTTGAAATA
ACGACTAGGAACGCATATTGCAGAAAGGTGTGAATAATAACAGACATATG
CAGAGCATGATTGCTACAGTTATAACGGTTATTAACACACGACACACGTG
ATTAAGACCAGCTAAGTTATTTTATGTACACGACGCCGAAATATTATAGA
AGACACAATAGATAAAGAAGATATTAGACTAGACGCGTATTATTTCGCAC
CGATTGTCTACGCCCGCGATTCATACTCCACTGCGACCCGCGATCCACCG
ACACGTATTTATTACAGCATAGTATGTTCGTGTGCGAATCTATATACGTC
CGCGCGCAACCAGGAAATATACGTCTCTACTCAACCACGAACTTCATTCT
ATACGCACTGAATATCCGACCATTATCCCAAACCACGTGTTACGAGATGC
CAGACATGTTACCGGATATGCACGGTCGCAGTTTAGTATACCATGCGGAT
ATTTATATAATACCCGATCAGATAACCGATCCTGAGCATTATTGCGTCTA
CTTCGCCCTAGTTTATCTTTATTCTTTCACTAACCGAGACGAGTACGGTA
TAATTACTCGTATCGCGAGAAAAGCGCTGCTCNTATATAAATNTTAGATG
CGAGACAACGCAGCGACATATATATATCAGTACACGGCCGTNTTACATTT
GCGACGACGATAATATATATAGCAGACCATTTATTGCGTGTTCGCGGGTC
TTATCACTTGTTTTCGTNTTTATTCTGTTGCGATTGTGTTACGCAGTCGC
GGCGTGTTGATCGCTGCTGCGTTATATATCGCCGATACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_a23.b1 MSMg01no360_a23.b1 CHROMAT_FILE:
MSMg01no360_a23.b1 PHD_FILE: MSMg01no360_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:42 2005
         (608 letters)



>mm_chr18_52281046_52282053
          Length = 1008

 Score =  201 bits (104), Expect = 1e-55
 Identities = 113/116 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcagcatcagtgttcattttttggctgtcagcgaactaggcaaaaaagtggcatgt 65
           |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 321 gaattcagcatcagtgttaattttttggctgtcagcaaactaggcaaaaaagtgtcatgt 262

                                                                   
Query: 66  gtagggacatcttttcataaaaggtcaaagaacgcattgtctgaatgtgagagtgt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagggacatcttttcataaaaggtcaaagaacgcattgtctgaatgtgagagtgt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |