Query= MSMg01no360_b05.b1 MSMg01no360_b05.b1 CHROMAT_FILE:
MSMg01no360_b05.b1 PHD_FILE: MSMg01no360_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:44 2005
(474 letters)
>mm_chr18_80035491_80036364
Length = 874
Score = 845 bits (437), Expect = 0.0
Identities = 462/473 (97%), Gaps = 6/473 (1%)
Strand = Plus / Plus
Query: 5 gaattctattccacttcccgtcctgatagtcagaccaggtaggatatttaaagatggcac 64
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattccacttccagtcctgagagtcagaccaggtaggatatttaaagatggcac 264
Query: 65 ctagtcctgatagtcagatggagtgggacatttaaagatggtcccatatgttccccattg 124
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 ctagtcctgatggtcagatggagtggggcatttaaagatggtcccatatgttccccattg 324
Query: 125 ctgctcctcattcagatattgtatgctgagatgatacagtctccagcagttgtgtaatct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgctcctcattcagatattgtatgctgagatgatacagtctccagcagttgtgtaatct 384
Query: 185 caatgcaacattctgtatttaatgtcgaagaactttttccttttatgcaaccataaaacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatgcaacattctgtatttaatgtcgaagaactttttccttttatgcaaccataaaacc 444
Query: 245 ttaaggaaggataagtatatatacctaaaggcagaatattta---taagctacaatgggt 301
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct: 445 ttaaggaaggataagtatatatacctaaaggcagaaaa---aaagtaagctacaatgggt 501
Query: 302 atggtaaaatagtaatgtttggggaacataggttaagtgtattaagtgaccttattggtt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atggtaaaatagtaatgtttggggaacataggttaagtgtattaagtgaccttattggtt 561
Query: 362 ttcaacttttgagaatagtttcaaactaaagcattaaaaataaatcttattttaattcaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttcaacttttgagaatagtttcaaactaaagcattaaaaataaatcttattttaattcaa 621
Query: 422 aaagaataaaagatatagctaatactaagcacttagcattttatatacaggca 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaagaataaaagatatagctaatactaagcacttagcattttatatacaggca 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_b05.g1 MSMg01no360_b05.g1 CHROMAT_FILE:
MSMg01no360_b05.g1 PHD_FILE: MSMg01no360_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:44 2005
(396 letters)
>mm_chr18_80200738_80201532
Length = 795
Score = 712 bits (368), Expect = 0.0
Identities = 389/396 (98%), Gaps = 1/396 (0%)
Strand = Plus / Minus
Query: 1 tctctcagacaacagactgttctcagtttgtggtctgtctgtttgtggataaaatcagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tctctcagacaacagactgttctcagtttgtggtctgtctgtttgtggataaaatcagga 536
Query: 61 gagaactaaggtcttttcagcaaaggaggcatcaaacatctctagtgtacaagcaaaaat 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 535 gagaactaaggtcttttcagcaatggaggcatcaaacatctctagtgtacaagcaaaaat 476
Query: 121 aacaggaaccagcagcaagcgcaggcatgggtgagcttgaatcgttcccactgtgggaac 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 475 aacaggaaccagcagcaagcgcaggcatgggtgagcttgaatccttcccactgtgggaac 416
Query: 181 tggctccagggacatccgaaggggtcgtgaccattgccctcatcagaggtcggagctgca 240
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 415 tggctccagggacatccgaaggggtcgtgaccattgccctcatcagaggttggagctgcg 356
Query: 241 tctgtagacttggggctgaggggtaggaggagagatagctggtcctccatctctaccttt 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 355 tctgtagacttggggctgaggggtaggaggagggatagctggtcctccatctctaccttt 296
Query: 301 tgtttttttgttgttttcatcttatagatggtgatagaagcctccaagatgactccaggc 360
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 295 tg-ttttttgttgttttcatcttatagctggtgatagaagcctccaagatgactccaggc 237
Query: 361 ttgccttctgggcagccggagcaagctaaacctcca 396
||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttgccttctgggcagccggagcaagctaaacctcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 795
Length adjustment: 9
Effective length of query: 387
Effective length of database: 786
Effective search space: 304182
Effective search space used: 304182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
