BAC Information

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BAC

Clone NameMSMg01-360L02
Chromosome18 (Build37)
Map Location 57,353,555 - 57,539,388
singlet/doubletdoublet
Overlap geneMegf10, LOC672445, Prrc1
Upstream geneLOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik
Downstream gene1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360L02.T7 (MSMg01no360_l02.b1)MSMg01-360L02.TJ (MSMg01no360_l02.g1)
ACCAG469807AG469808
length773755
length of high quality
(start - end)
246 (52 - 297)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no360_l02.b1 PHD_FILE: MSMg01no360_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:30 2005CHROMAT_FILE: MSMg01no360_l02.g1 PHD_FILE: MSMg01no360_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,353,555 - 57,353,797)(57,539,108 - 57,539,388)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGAATCCGCGG
AATTCATTGGTTTTTCCCTGCTTGCTTGTTTATCCCAAATATTTTCTTCT
CTCCTTTATAGGAAAAAAAAATCAGGTTCAGTAAAGAGGGTTCAGTACAT
AGATGGTTAAAGTTAACACGCACCGATTGTCTGTGGTATAAAATCCAAAG
GCTGGGCTCTGTGATTACATGCTTACATGCTTATCTGAGAGAGCTATGCT
CCTGTCCCGCGTTGAGTTTGCCCTAAGTAGTTTTTAATGTCTTCTGAATG
ACTACAGATTAGTAGTTATCTCGACCGATTATTCATTCTGTTCCATGCAT
ATATGGTGCCGCTGTATTAATTCCCCCAGATCTCACTATGATACAGATTT
GATCTTATGCATTCTGTATATGAGTAAATCTGTTATTTGTTGTTTTTTGC
TGAAAACTGTCTGCTGAATGTTCTCTGATTGTGCAATGATGTACTTCTTC
TTCCCCATCCATTGTTTTTCGTTTCTTATATTTTTTGACTAGTGCTATTT
ATTTTTTCTTCTCTCTTTCTTTACACCGCTGTGCCTTCTTATTATTTTAC
TTCTTATTTTTTTTTTCATCCCCCTTATATAATTGTCTCTTGACTTTTTC
CCCCTTTCCAATCTTTATTTCCTTATTTCTTTTTCATTTCTTATTTTTTT
TCCCCCTTTTTAACTTTTATATTTCCCTTTATTTCTTACACACTATTTTC
CTCTCTTCTTTATCTTTTCTTCG
CATTCTAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGCAGCCTCCTCTAGAGTTAGATG
ACGTTTGAGTATCACTCCCTACCAATGTTTGGAGAAGGGGTTCTACTCTT
ATCAGTATAAGGGCTCCACGATTAAGACAGTTTTGAGGTACACAAATAAT
CTCCAACTGAGCTGATGTAGACGAGCTCAGGACTTACGCTGTAGCTGAAG
CAACTTGGTTCAGACTGACAATCTGATTGCACAAACGGTCACGGTGCTCA
CTGGTGTGCACACGGTCACAGTGCTCACTGGTGTGCACTCGGTCACAGTG
CTCACTGGTGTGCACACGGTGTGCACACGGTCTCGTTGCTCACTGGTGTG
CACACGGTCACAGTGCTCACTGGTGCGTACATGGTCACTATGCTCACTGG
TGTGTACATGGTCTCAATGTTCTCTGGTATTGCACACATCATCACAGTGC
TCCCTGTTGTTGTGCCCATGGTCTTTAAACCCGTTTTTGTTCTTATCCTA
CCTGTTGTTTGCCCATTCTCTTTCCTTTTGCTTTAAAGAACTTTTGCTTA
TATTTCCTTCTATCCCTTTTTCCGTTTTATCATATGTTTACGCTCATCTT
CACTTTATAATTTTATTGACCCCATTCTTCTATTTTCGATTGGTTTGCCT
TTCTTCCTTTTTCATTTCTCTTCTTCTTTACCTACATTTTTAATCTTCTT
TTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_l02.b1 MSMg01no360_l02.b1 CHROMAT_FILE:
MSMg01no360_l02.b1 PHD_FILE: MSMg01no360_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:30 2005
         (246 letters)



>mm_chr18_57353355_57354000
          Length = 646

 Score =  416 bits (215), Expect = e-121
 Identities = 236/243 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcattggtttttccctgcttgcttgtttatcccaaatattttcttctctcctttatag 60
           ||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 attcattggtttttgtttgcttgcttgtttatcccaaatattttctcctctcctttatag 260

                                                                       
Query: 61  gaaaaaaaaatcaggttcagtaaagagggttcagtacatagatggttaaagttaacacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gaaaaaaaaatcaggttcagtaaagagggttcagtacatagatggttaaagttaacatgc 320

                                                                       
Query: 121 accgattgtctgtggtataaaatccaaaggctgggctctgtgattacatgcttacatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accgattgtctgtggtataaaatccaaaggctgggctctgtgattacatgcttacatgct 380

                                                                       
Query: 181 tatctgagagagctatgctcctgtcccgcgttgagtttgccctaagtagtttttaatgtc 240
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 381 tatctgagagagctatgctcctgtcccgcggggagtttgccctaagtagtttttaatgtc 440

              
Query: 241 ttc 243
           |||
Sbjct: 441 ttc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no360_l02.g1 MSMg01no360_l02.g1 CHROMAT_FILE:
MSMg01no360_l02.g1 PHD_FILE: MSMg01no360_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:30 2005
         (281 letters)



>mm_chr18_57538908_57539588
          Length = 681

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggcagcctcctctagagttagatgacgtttgagtatcactccctaccaatgtttggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaggcagcctcctctagagttagatgacgtttgagtatcactccctaccaatgtttggag 422

                                                                       
Query: 61  aaggggttctactcttatcagtataagggctccacgattaagacagttttgaggtacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaggggttctactcttatcagtataagggctccacgattaagacagttttgaggtacaca 362

                                                                       
Query: 121 aataatctccaactgagctgatgtagacgagctcaggacttacgctgtagctgaagcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aataatctccaactgagctgatgtagacgagctcaggacttacgctgtagctgaagcaac 302

                                                                       
Query: 181 ttggttcagactgacaatctgattgcacaaacggtcacggtgctcactggtgtgcacacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttggttcagactgacaatctgattgcacaaacggtcacggtgctcactggtgtgcacacg 242

                                                    
Query: 241 gtcacagtgctcactggtgtgcactcggtcacagtgctcac 281
           |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 241 gtcacagtgctcactggtgtgcacacggtcacagtgctcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)