Query= MSMg01no361_i23.b1 MSMg01no361_i23.b1 CHROMAT_FILE:
MSMg01no361_i23.b1 PHD_FILE: MSMg01no361_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:38 2005
(517 letters)
>mm_chr18_47088758_47089675
Length = 918
Score = 640 bits (331), Expect = 0.0
Identities = 378/409 (92%), Gaps = 26/409 (6%)
Strand = Plus / Minus
Query: 128 tttttacagactctagtgctgggactaaaggcacatgccaccactacccagcactttttc 187
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 918 tttttacagactctagtgctgggactaaaggcacacgccaccactacccagcac-ttttc 860
Query: 188 ctt------------------------tttgtttgtttgtttttccagagagggtttctc 223
||| |||||||||||||||||||||||||||||||||
Sbjct: 859 ctttttgtttgtttgtttgtttgtttgtttgtttgtttgtttttccagagagggtttctc 800
Query: 224 tgtgtagccctggttgtcctgaaacttgctctgtagccaaggctggccttgaactcagag 283
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 799 tgtgtagccctggttgtcctgaaacttgctctgtagcggaggctggccttgaactcagag 740
Query: 284 atctgcctgtctctgcctcctgagtactgagattaaagacatcgcccagctgaggaaaga 343
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atctgcctgtctctgcctcgtgagtactgagattaaagacatcgcccagctgaggaaaga 680
Query: 344 atctattttcaataaaagaaatt-aaaaaaaaataccatcctagcgatggcttatgccat 402
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 679 atctattttcaataaaagaaatttaaaaaaaaataccatcctagcgatggcttatgccat 620
Query: 403 caccttcgaaatacttgaaaatctcaaattttcaaaataggagtgcttagctttcactcc 462
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 619 caccttcgaaatacttgaaaatctcaaattttcaaaatagaagtgcttagctttcactcc 560
Query: 463 tcctgtttcatataaatcatttaaagtgtgtgtgtgtgtgtgtgtgtgt 511
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcctgtttcatataaatcatttaaagtgtgtgtgtgtgtgtgtgtgtgt 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space: 460356
Effective search space used: 460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_i23.g1 MSMg01no361_i23.g1 CHROMAT_FILE:
MSMg01no361_i23.g1 PHD_FILE: MSMg01no361_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:38 2005
(462 letters)
>mm_chr18_46942441_46943304
Length = 864
Score = 870 bits (450), Expect = 0.0
Identities = 460/464 (99%), Gaps = 2/464 (0%)
Strand = Plus / Plus
Query: 1 aagtctttaatttttttagttgacttcaggtatgtagatctaaccagccaggtggctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtctttaatttttttagttgacttcaggtatgtagatctaaccagccaggtggctcca 260
Query: 61 aagactgatccaaatttatttgagagtaaagtattattttcttagtaaattccagttaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagactgatccaaatttatttgagagtaaagtattattttcttagtaaattccagttaaa 320
Query: 121 ttatcataaagaaaaataataaggaagacataactaaaattctgattggtaaaaagaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatcataaagaaaaataataaggaagacataactaaaattctgattggtaaaaagaact 380
Query: 181 gatcatattttttaaattcttatggactattttaggattatcttctagcttttgaaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcatattttttaaattcttatggactattttaggattatcttctagcttttgaaaaat 440
Query: 241 caccctgaatttaattaatttatggcttttaaagtataaatttatctaggttacctattt 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 caccctgaatttaattaatttatggcttttacagtataaatttatctaggttacctattt 500
Query: 301 taataattaaatatggtgactattttaataattaaatatggtgactttgaggcagtgagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taataattaaatatggtgactattttaataattaaatatggtgactttgaggcagtgagt 560
Query: 361 ttccagtgatggaagaaaatgaccagtttaattcc--gagtctagacaggtagaaggaca 418
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 ttccagtgatggaagaaaatgaccagtttaattcctagagtctagacaggtagaaggaca 620
Query: 419 ggtctgtcccatcgtgaaggaggagagaggcaaagacatgcaca 462
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtctgtcccatcgtgaaggaggagagaggcaaagacatgcaca 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 864
Length adjustment: 10
Effective length of query: 452
Effective length of database: 854
Effective search space: 386008
Effective search space used: 386008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
