BAC Information

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BAC

Clone NameMSMg01-362B08
Chromosome18 (Build37)
Map Location 65,899,411 - 65,899,806
singlet/doubletsinglet
Overlap gene5330437I02Rik
Upstream geneNedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532
Downstream geneSec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362B08.T7 (MSMg01no362_b08.b1)MSMg01-362B08.TJ (MSMg01no362_b08.g1)
ACCAG470854AG470855
length788754
length of high quality
(start - end)
399 (44 - 442)413 (75 - 487)
definitionCHROMAT_FILE: MSMg01no362_b08.b1 PHD_FILE: MSMg01no362_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:19 2005CHROMAT_FILE: MSMg01no362_b08.g1 PHD_FILE: MSMg01no362_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCCTGTTGGAATTCCAGACAGACCTAAGGACAGCCACCTCCTACATT
CCTGAATCGTGACCCCAGTCAGTTCCCATGGCTGTCCTAGGATACAAGAG
AGAAATAGGTCTGAATCTCCCAGGGACCGGTCAGGTTTGGTTCAAAGACT
GATTTTGAGGAATGAAGGCTCTCTTGTTTCAGTTTCCTCTTGCTATGGAA
GCCGCCCCACCCACCCACTGAACTTGCCCTCACAGGCGGAGCCGAGCTGC
AGACTCTCAACAGCCCTGCACCTGGAGGGGAGGAGTCACAGTTACTTCTC
TCCCCTCCCCCGCAGTGCAATGGCTGGACTTGGTACCTCGCCAGCGACTT
CCAGTTCCACCTGACGACACCGCTGATCTTCTTCGTCCATGGAAAGTGGG
TTTGAGACTTTTCTTTTCCCTCAGGGGTCCTTTGGCCTGCAACTCCCCGC
TATATCCCTGTCTTGCTTGATGTTGTTTCTCCAACGTTATTCATATTCTT
TTTCCCCAAATGTTGACTCCTTCTCCCCTCTTTCTCTGTTTTTTTTCCTG
TGCCCTTCTTTCTTGTGTCCCTTTTCTTAATTTTTCTTGCTCTAAATTAG
TCGTTCTCCCTCCCCCTTTTTTCCTCTCGGTTTGTTTTTTCTCCATTGTT
TCCTCTATTTCTTTCTTTCCTTTCTCTCCTATTAATACTCCAACTCTCTC
ATATTTCGCTTACGTCGTTTTTCTTCTCTGCCAACCTN
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGAAAAGACGCTGCGTCTGGCTGTG
AACAAAAACTCAGAGAAGGACTTTCTGTGCCTGCAGAGAATGACGGGCTG
ATGGGAATTTCAGTACTGTGGGGAGATTGGGATTGCAGAGAACTAGTTCA
GAGGGCTAGTTTTAACTTTGGGAACAGCCTTTGCCTGCCTTTACTCTGTA
TTAGAACTAACATCTTGTGACAATAGATATAAACCTTGTAGACGCTACTA
ACTTAGAAGTAACATTTTGTGATAGTAAATAAAAACCTCTTAGAAGCTAT
CAACTTAACAGAATACTAGCTTCTGCCAATCCAGGAGCCATTAGAGAGCA
TCTTTGGCCTGTAAAAAAAAATTTCTCCCATTTCAATGTATCTCCCTTCT
GATGCACCCACCAATGTATTTTAAACTTGCCTTGTGTCTCAGTGTTTCAT
TTCTGTGAAGGGACTCCATGACCCATGTAACTCTTTTAAGGCTTACATTT
AACTGGTGCTGGCTTACAGTTTCTGAGGCTTACTCCATGTTCCTCTTCTC
CCATAGTATGGCCTTACCCCTTGCCTATTTGGCGCATGACTCATCCCACA
TCTCCCATCCCTCTCTCCGTATCTCCCGATTCCCTTGGCCTGACTCCTTC
CTATCTGTTTTTGCCGCCTTGCCTCCTCCCCCCTTTCCTTGTTTTCTCAT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_b08.b1 MSMg01no362_b08.b1 CHROMAT_FILE:
MSMg01no362_b08.b1 PHD_FILE: MSMg01no362_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:19 2005
         (399 letters)



>mm_chr18_65899208_65900006
          Length = 799

 Score =  712 bits (368), Expect = 0.0
 Identities = 389/396 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccctgttggaattccagacagacctaaggacagccacctcctacattcctgaa 63
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccctcttggaattccagacagacctaaggacagccacctcctacattcctgaa 263

                                                                       
Query: 64  tcgtgaccccagtcagttcccatggctgtcctaggatacaagagagaaataggtctgaat 123
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 264 tcgtgaccccagtcagttcccatggctgtcctacgagacaagagagaaataggtctgaat 323

                                                                       
Query: 124 ctcccagggaccggtcaggtttggttcaaagactgattttgaggaatgaaggctctcttg 183
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 324 ctcccagggaccggtcaggtttggttcaaagactaattttgaggaatgaaggctatcttg 383

                                                                       
Query: 184 tttcagtttcctcttgctatggaagccgccccacccacccactgaacttgccctcacagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttcagtttcctcttgctatggaagccgccccacccacccactgaacttgccctcacagg 443

                                                                       
Query: 244 cggagccgagctgcagactctcaacagccctgcacctggaggggaggagtcacagttact 303
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 aggagccgagctgcagactctcaacagccccgcacctggaggggaggagtcacagttact 503

                                                                       
Query: 304 tctctcccctcccccgcagtgcaatggctggacttggtacctcgccagcgacttccagtt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctctcccctcccccgcagtgcaatggctggacttggtacctcgccagcgacttccagtt 563

                                               
Query: 364 ccacctgacgacaccgctgatcttcttcgtccatgg 399
           ||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccacctgacgacaccgctgatcttcttcgtccatgg 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)