BAC Information

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BAC

Clone NameMSMg01-362F12
Chromosome18 (Build37)
Map Location 87,871,363 - 87,910,291
singlet/doubletdoublet
Overlap genenone
Upstream geneCbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
Downstream geneLOC329008, LOC100039961, LOC100039972, LOC623177, LOC665497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362F12.T7 (MSMg01no362_f12.b1)MSMg01-362F12.TJ (MSMg01no362_f12.g1)
ACCAG471051AG471052
length769771
length of high quality
(start - end)		468 (44 - 511)489 (74 - 562)
definitionCHROMAT_FILE: MSMg01no362_f12.b1 PHD_FILE: MSMg01no362_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:40 2005CHROMAT_FILE: MSMg01no362_f12.g1 PHD_FILE: MSMg01no362_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,871,363 - 87,871,827)(87,909,929 - 87,910,291)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAGTGAAACCTGGACATATCCTTATAAGAAGAAAGGAAGTTTAACC
TGTAATTTGATCACCAGACTACTAGACATGTGACTACTTCAAGGGTGGCA
GAGGTGTGGGTCATAAGGCTTACATGCACTGGAACATTCAGGCCCAGAGC
AAGGAGGGAACAGTCTTACTCCTGCTGATCTCACGATGATATTTTCAGGG
TTTGGGTGTGTCTCAACCTTACTCTTGTACTGGATTGACTCCCTAAGTCG
CACTGCTTTCGGGCCCCACACTAGACCTGTGCTAGACTTTTAAAATCTCA
AATGAGGCCTTGGTGCTCTCACCCTAACCCTAAGAGATCCCTTAAACTAT
TACTGATGCTATAATATGCTTACACACAGGAGCCTATCATGGTTATCCTC
TGAGTGGTCCTACCACCAGCTGACTGAGATAGATGTAGATACTTATTCCC
AACAATTAATTGTACTGGGGTTGGAGATCCCTTTGGAGGAGTTAGGCGAA
TAATTTGAAAATCCAAGTTGACTAACTCATCGTTAATCCACATTCCCTTT
TTTTTTTTCTTCTCCTACCTTATTTTACACCTGAGCATCTCTCTTATCCT
TTTCTTTTGCCAACCCCAGTCCCCCCTTCCTTTTTTTTCCTTTTTCCGTT
CGACCCGCCCTATTTATATTCTCTTTTATCTCTCCCCTCCTATCTTTTTT
CTCATATTCCTCCTCCACC

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAACTTATTATTTTGTTTTAACTGAA
ATGAAGTCAAAACAAGGGTATCTGTTGTACTTTTCACTCAGGAAAAAGTT
TGTGAAGATAGTCAGCAATCATATTAAATAAAAATGGTTTAGAGACAGAA
AAGAATTTTATAGGGTATATTGATGCAATAAAGTAGCTTGTTATCTTAGG
GGACCCAGTCTCAGAACACTCCTATACCTACTAAAACTCTTAGATATCCC
AGTCTTTTATGTAAAATGCATAGCCATTGTTTGTAATTACACATACCATT
CCATTTACTTAGATCATATCTAGGTTCCTTAGAATACACAAATCAATGTA
TAATTAATAAGACTTGGTTTTACTGTATTTTGAGTAGATAATGACAAGAA
AGATCTGTAAGTGTTCAATATAAAACATATCCTTTAAACAAATTATTTAT
TGCTGTTGTGGTAGATAGTGGTCACACATAATGAAGAGCTGTAAAGGTCA
AAGGGGAGTGTTCTGTANAGTGTAGTGTAGTTCCTTTCTTTTTCAATGCG
TTCCAGGGATCTGGGCACCAGGTTTGTGTAAGCAATGCTTTTGCTCAGAG
TTGTCTTGTAGGCTCCCCACACCTATCTTTTAGGAAAATTCTTGTTTCCC
TGTTTATTAATTCCCAAAGTCCAAGTTGCCATGGCCCCGGCCCGCTAATG
TTTTTCCTTGTACTCCATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_f12.b1 MSMg01no362_f12.b1 CHROMAT_FILE:
MSMg01no362_f12.b1 PHD_FILE: MSMg01no362_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:40 2005
         (468 letters)



>mm_chr18_87871160_87872027
          Length = 868

 Score =  891 bits (461), Expect = 0.0
 Identities = 464/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaagtgaaacctggacatatccttataagaagaaaggaagtttaacctgtaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaagtgaaacctggacatatccttataagaagaaaggaagtttaacctgtaat 263

                                                                       
Query: 64  ttgatcaccagactactagacatgtgactacttcaagggtggcagaggtgtgggtcataa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgatcaccagactactagacatgtgactacttcaagggtggcagaggtgtgggtcataa 323

                                                                       
Query: 124 ggcttacatgcactggaacattcaggcccagagcaaggagggaacagtcttactcctgct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggcttacatgcactggaacattcaggcccagagcaaggagggaacagtcttactcctgct 383

                                                                       
Query: 184 gatctcacgatgatattttcagggtttgggtgtgtctcaaccttactcttgtactggatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatctcacgatgatattttcagggtttgggtgtgtctcaaccttactcttgtactggatt 443

                                                                       
Query: 244 gactccctaagtcgcactgctttcgggccccacactagacctgtgctagacttttaaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gactccctaagtcgcactgctttcgggccccacactagacctgtgctagacttttaaaat 503

                                                                       
Query: 304 ctcaaatgaggccttggtgctctcaccctaaccctaagagatcccttaaactattactga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcaaatgaggccttggtgctctcaccctaaccctaagagatcccttaaactattactga 563

                                                                       
Query: 364 tgctataatatgcttacacacaggagcctatcatggttatcctctgagtggtcctaccac 423
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 564 tgctataatatgcttacacacaggagcctatcatggctatcctctgagtggtcctaccac 623

                                                        
Query: 424 cagctgactgagatagatgtagatacttattcccaacaattaatt 468
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagctgactgagatagatgtagatacttattcccaacaattaatt 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_f12.g1 MSMg01no362_f12.g1 CHROMAT_FILE:
MSMg01no362_f12.g1 PHD_FILE: MSMg01no362_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:40 2005
         (489 letters)



>mm_chr18_87909929_87910817
          Length = 889

 Score =  702 bits (363), Expect = 0.0
 Identities = 363/363 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacttattattttgttttaactgaaatgaagtcaaaacaagggtatctgttgtacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaaacttattattttgttttaactgaaatgaagtcaaaacaagggtatctgttgtacttt 304

                                                                       
Query: 61  tcactcaggaaaaagtttgtgaagatagtcagcaatcatattaaataaaaatggtttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcactcaggaaaaagtttgtgaagatagtcagcaatcatattaaataaaaatggtttaga 244

                                                                       
Query: 121 gacagaaaagaattttatagggtatattgatgcaataaagtagcttgttatcttagggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gacagaaaagaattttatagggtatattgatgcaataaagtagcttgttatcttagggga 184

                                                                       
Query: 181 cccagtctcagaacactcctatacctactaaaactcttagatatcccagtcttttatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 cccagtctcagaacactcctatacctactaaaactcttagatatcccagtcttttatgta 124

                                                                       
Query: 241 aaatgcatagccattgtttgtaattacacataccattccatttacttagatcatatctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aaatgcatagccattgtttgtaattacacataccattccatttacttagatcatatctag 64

                                                                       
Query: 301 gttccttagaatacacaaatcaatgtataattaataagacttggttttactgtattttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  gttccttagaatacacaaatcaatgtataattaataagacttggttttactgtattttga 4

              
Query: 361 gta 363
           |||
Sbjct: 3   gta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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