BAC Information

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BAC

Clone NameMSMg01-362J22
Chromosome18 (Build37)
Map Location 89,263,342 - 89,263,720
singlet/doubletsinglet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320, LOC620693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362J22.T7 (MSMg01no362_j22.b1)MSMg01-362J22.TJ (MSMg01no362_j22.g1)
ACCAG471262AG471263
length773774
length of high quality
(start - end)		435 (47 - 481)476 (77 - 552)
definitionCHROMAT_FILE: MSMg01no362_j22.b1 PHD_FILE: MSMg01no362_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:03 2005CHROMAT_FILE: MSMg01no362_j22.g1 PHD_FILE: MSMg01no362_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGAAGTCTTTAATTTCTTTATTTCTTCCCTGACCAAGTTATC
ATTGAGTAGAGAGTTGTTCAGTTTCCATGAGTATGTGGATTTTTCTGTTG
TTTTTGTTGTTATTGAAGTCTAGCCTTAGTCTGTGGTAATCTCATAGGAT
GCATGGGATTATTTCAATTTTCTTATATCAGTTGAGGCCTGTTTTGTGGT
CAATTTTGGAGGTGGTACTATGAGATCCTGAGGAGAAGGTATATTCTTTT
GTAAAATCTTTGTACTCTCTTCATCCTCTGCTCTATTAAAGCTATATAAA
GTTTAATCTCTGGATATTAGAAATATCATTATAAATAATCCAGTGAGAAA
CAGGAGAGAAAAGCTATTTTTTGTAAATTAACCATTTAAGGTTAAATATT
GATATTCTATGTATAACAATCTTTTTACTAAATACAACAACAACTAAAAA
CAAAACCTTCTAATCACACCCTCCAACATACTTTGCCTGTAGCTGACTAA
TCTGACTGCCAAGCTCTATTCCATGCCCTGCCTCAGATATTATTATTTGG
TTTTCCTTTCCAGCTCATGTTCTCTGCCCTATTTTGACCTTCTGACCACT
CTATTAAGACCTGTTTGTCCCCCTCCCTATTTTACTCCTTTATCCCAATG
GCACTTTTTTTTTTTTTTCCCACACCCCTCGGCTCTATTCTATGTATCAT
ATTTTTTCTTTTTTCATCCACTN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTGTCTCTGCCTCCCAGTTTC
CATCCACAGCATAGACGTTATAGATTTATGCTATTGTGCCTGCTTTAGTG
TGTGTGCTGGGGAGTCCAAACTCAGGTCCTCATACTTGTGCAGCAATTTA
AAAAATTCTTATTTGAAATTCCTATACAATAAGAATACCACCAGGTAATG
GTGGCAGGCAGGTCTCTGAGTTCAAGGCCAGTTAAGTCTACAAAGTGACG
AAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG
AAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGGAAGGAATACTGTCTGTATATAGGTAACATGTTAATT
TTGCTGGAATTTTTAGCTCTAATTTGGCAAAAGTCTTCAACCAGACTACA
GTGTGAGGGGCTCATTTTTCTTCCTGTGTCCCCCTTATTATGTCCCCTTA
GTTTTCCAAGCCTTTCTTTTCCGCTTCACCATCCTTTGAGGTACATCCCC
TCGCCCAAGGTATGGAATAATATAATTGGGTTTCCCGGCTCCCCCTCTGG
GGTATTCAAGGCCCTGAGTACGATTACCCTACCCTTTAGACACCACTTTT
ATTTTTTCCCTTTCCACCCATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_j22.b1 MSMg01no362_j22.b1 CHROMAT_FILE:
MSMg01no362_j22.b1 PHD_FILE: MSMg01no362_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:03 2005
         (435 letters)



>mm_chr18_89262886_89263720
          Length = 835

 Score =  733 bits (379), Expect = 0.0
 Identities = 379/379 (100%)
 Strand = Plus / Minus

                                                                       
Query: 54  cattgagtagagagttgttcagtttccatgagtatgtggatttttctgttgtttttgttg 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 cattgagtagagagttgttcagtttccatgagtatgtggatttttctgttgtttttgttg 776

                                                                       
Query: 114 ttattgaagtctagccttagtctgtggtaatctcataggatgcatgggattatttcaatt 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ttattgaagtctagccttagtctgtggtaatctcataggatgcatgggattatttcaatt 716

                                                                       
Query: 174 ttcttatatcagttgaggcctgttttgtggtcaattttggaggtggtactatgagatcct 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttcttatatcagttgaggcctgttttgtggtcaattttggaggtggtactatgagatcct 656

                                                                       
Query: 234 gaggagaaggtatattcttttgtaaaatctttgtactctcttcatcctctgctctattaa 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaggagaaggtatattcttttgtaaaatctttgtactctcttcatcctctgctctattaa 596

                                                                       
Query: 294 agctatataaagtttaatctctggatattagaaatatcattataaataatccagtgagaa 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 agctatataaagtttaatctctggatattagaaatatcattataaataatccagtgagaa 536

                                                                       
Query: 354 acaggagagaaaagctattttttgtaaattaaccatttaaggttaaatattgatattcta 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 acaggagagaaaagctattttttgtaaattaaccatttaaggttaaatattgatattcta 476

                              
Query: 414 tgtataacaatctttttac 432
           |||||||||||||||||||
Sbjct: 475 tgtataacaatctttttac 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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