BAC Information

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BAC

Clone NameMSMg01-362M11
Chromosome18 (Build37)
Map Location 90,401,189 - 90,401,659
singlet/doubletsinglet
Overlap genenone
Upstream geneCd226, Dok6, LOC383320, LOC620693
Downstream geneEif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362M11.T7 (MSMg01no362_m11.b1)MSMg01-362M11.TJ (MSMg01no362_m11.g1)
ACCAG471383AG471384
length1,077780
length of high quality
(start - end)		---472 (71 - 542)
definitionCHROMAT_FILE: MSMg01no362_m11.b1 PHD_FILE: MSMg01no362_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:16 2005CHROMAT_FILE: MSMg01no362_m11.g1 PHD_FILE: MSMg01no362_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTCCTCGTTTAGGGTTATATCTTGGCGGGTCGGCTAATCACGTACTC
ACTTATTTCCCCNATGAGGAATCCGTCGGGTAACTTCTCTTTGGTTTACG
CCTCTGGAGCCTCTCATCTTCTTACCATCGCGGTGCTCATCATCCATTTC
CTTCCTTAAGAGGCTTTCACTCTTCTCCTGTTCCAGGCGTTTCCGTCTAA
CGACGAATAATTTCAAGTATGATCTTAAGGGCCCTCCCCCCTATCCCCGG
GAATTTTAAGGGCAACAATGGTTAACAGGGAACCCTCTTTAACACCAGTT
CCTTGGGTCGGGGGGGGGCCCTTTTCTTTTGGGTTCCTTTCACGTGAGAC
GGGGGGGGGCCCCTTCCTTTTGGGCCCCCATAACATGGAAAAGCCCCCTC
GGGCTGCAAACGTTTCCTCTATGGGTGGACGTCTCCCAATATTTGTGTGC
TATAAATACCCCTTGCGGGCTATTTCCATTATACGGTGCGCCACTATTTG
TGTCCACTCCCGGGGCGGGGTGCTCTTTTTCTCTGCGAGTGGGGTAATCT
GTGCCTGTATCCTTTGGGTGTGGCGGCGCGTGATGCCGCTCTCTTCCGCG
CGCGTGAGGGCCTTATTTTCGTCTCCCTCCGTTACTGCGCTCGCCCTCCC
CCTGTGCGTCTTGTGGTGGTTCTACCGTGTTTGTTTCACTTATCTCGTGA
TTTCTTTGCTCCTGAGATTGCGCTTCGTGTTTGTTTGCGCGCCATGCCCT
CTTCTTCCTTCCATACTCTCCACCCGCTCCCTCATTCTTTCTTTATATGT
CTCTGCCTTCTCCTCTTCTCCCGCCCACTCCACTTCTGTTCCTCCGTGCC
CCACTGCCACCCTTCCCGCCCATCTTTCTCTTCGCGGTGTTGTTGCTGCT
CTGCTTTTTTCTCTTCCTTTCCCGCGTCCGCGTGTTGTGGTCTGCGGTTG
TTCTTGTCTGCCGACTATGCACCGCCTTTTTTATATTATTTCTACGCGTA
CGCTATTTCTCACTTACTATTACTTCTTATCTCGCTCGTCCCGCTTGTAT
ACTGTTGCTGTGTGTGGCTCCCTCTCG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCACTATAGCTAAGATGTATAAAGTGTAT
TTTCTTACATGAATGAATAAAAATATTTGACATATTTTAAATATCATTGT
TTTCCTTCTATTTTTTTTAAATTATTATTATGTCATTCCTCTCCTCTTCT
TTCTTACTTGCAAATCTTCCCACATACCACTCCTTGCTTGCTTTCAAATT
CATGGCTTCTCTTTCTTTTAATTGTTGCAATATTCATATAAAATTCATAA
GCATAATGAAATAGCACTCCATATGGACAGTCTAGCAACAACATGTATAA
ACATGTAAGACATGAAAGTGGAACCAACAGGCATCTGAAAATAAATACTA
TATGAGATCAATTGATTGTGTGGTAGTTTGAATAAGAATAGTACTCACAA
GCTCCTTTACCTAAATATTTGCTCCTCCGTTGGTACAAATTTTTGTGAAG
GGCTAGGGGCTATTGTTTTGTAGGCTTTAAAGTTTTAAAACCTACACTTT
TCCCAGTTAATTCATTCTTCCTCCTGTCTGNGGATGTTAGAAGCTCTCAA
TTACTGCTCTGCCATCATGCCTGCTTGTCTGATGCCGCGTCTTTTTGCCA
GGCATATTATGTATTGTAAACCTCCGGATCCCTGGAATCTTAATTAATAA
TCTTCAAAATCACACTAAATATTTGTTGGCTTCTTACCAAACCCTTCTTT
TCAATTCTTTCTTGCATTTTGTCCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_m11.g1 MSMg01no362_m11.g1 CHROMAT_FILE:
MSMg01no362_m11.g1 PHD_FILE: MSMg01no362_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:16 2005
         (472 letters)



>mm_chr18_90400988_90401859
          Length = 872

 Score =  866 bits (448), Expect = 0.0
 Identities = 466/472 (98%), Gaps = 1/472 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcactatagctaagatgtataaagtgtattttcttacatgaatgaataaaaatatttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctcactatagctaagatgtataaagtgtattttcttacatgaatgaataaaaatatttga 261

                                                                       
Query: 61  catattttaaatatcattgttttccttctattttttttaaattattattatgtcattcct 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 262 catattttaaatatcattgttttccttctatttttttt-aattattattatgtcattcct 320

                                                                       
Query: 121 ctcctcttctttcttacttgcaaatcttcccacataccactccttgcttgctttcaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctcttctttcttacttgcaaatcttcccacataccactccttgcttgctttcaaatt 380

                                                                       
Query: 181 catggcttctctttcttttaattgttgcaatattcatataaaattcataagcataatgaa 240
           |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct: 381 catggcttctctttcttttaattgttgcaatattcatatataattcataaacataattaa 440

                                                                       
Query: 241 atagcactccatatggacagtctagcaacaacatgtataaacatgtaagacatgaaagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagcactccatatggacagtctagcaacaacatgtataaacatgtaagacatgaaagtg 500

                                                                       
Query: 301 gaaccaacaggcatctgaaaataaatactatatgagatcaattgattgtgtggtagtttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaccaacaggcatctgaaaataaatactatatgagatcaattgattgtgtggtagtttg 560

                                                                       
Query: 361 aataagaatagtactcacaagctcctttacctaaatatttgctcctccgttggtacaaat 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 aataagaatagtactcacaagctcctttacctaaatatttgctcctccattggtacaaat 620

                                                               
Query: 421 ttttgtgaagggctaggggctattgttttgtaggctttaaagttttaaaacc 472
           |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 ttttgtgaagggctaggggctattgttttgtaggctttaaggttttaaaacc 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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