NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCGCATTACCTGAGGGATTTGCACATCGGCATGTTCCTCGCAGG
CCGGAATGTCCTGGGAGAGTGGAGAGGGTGACAAACAGGCAGGAGAGGCC
CGTCTGCCGTGCATCACCAGGCACGGGGGAGTCAAGGGCAGGACTGGCCT
CAGACTCAGTTTGGTGATTTTTTTTTTCTCGGAGAAGGGTCAGAAACAGA
GTACAGGAGTACAAGCTCTAGACCATGGCTGCCAGCCGCCAGCAATCCGT
TCAACCCCACAGCAGATAGGCACACAGGCCTGTGGCACCCAGGAAATGAG
AACTGTCTGCAGAGACTACCCCAAGATGGGTTATTTCATCAAGAACCCAT
GGCAAGAACCCAATGGCAATTTCAATTAGTGAAGTCCTACTGTGCGCCCT
AACTAGCATGCCCATGTGAAGGGAGCATTACTGGTACACAGCTGCGTTGG
GTCTTTGTCTCCCTCTCTTTTCCTTTTTCTCCCCCCCCCTCTTTTTTCTC
CCCTTTTTCTTCACTTTTATGTTCATTTCCCCTCCCTTTTCCTACTTTTT
TTTCTCTCCCCCCCCTCTATTTTTCCTCCCTTCTTCCCTTCCTTTACCCT
CTTCTCTTCTCATTTTTTCTCTCCTTCTCCTCCTCTTTTTTTGTTAAATT
CCCTTCCCCCCCCCCTTTTTTTTTCTTCTTTTCTGTTCACCCTCTCCTTT
TTCTTTACCCTCTTCTTTCTTTCTTTCTCTCT

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTAAATAGAAGTTTAAGTA
AATACAGAACAATCACTTTACAGNAGGCAGCTCAGGGAGCAACGGGGCGG
GGGGGGGGGGCAGTANTNCNTTCTNGTATATTATTTTTATATATTCATTC
TTCCCTTCTCTCTTCTTCTACCTCCTTTCCCTCTCTTCTCCCTCCTTTCC
TCCCTCCCCTTTCCTCCCTCCCTTTCCTCCCTCCTTCCCCTCTTCTTCCC
CCCTCCCTTTCTTCCTCTTCTTTCTCTCTCTCCTCCCCCCTTTTCCCCCC
CTTTCCCTCCCTTCTTTTTTTTCCTTTTTCCTACCTTTCCCCTTCCTTCT
TTTTTTTTCTTTTTTTCCCCCCCCCCTTTTCTCCCTCTTCTACCTTCCCC
TTTCTCCCTTTATTTCCCTTCCCTTTCTCTCCTCTCTTCTCTTCCTTTTT
CTTCTCCCCTCTTTATCCCTCCTCCCTTTTTTTCTCTCCTTCTTCCCCCC
TTTCCTTCCCTTCCCCTTCTTTTTTTCTTTTCCTCCCTCCCTCTCTTTTC
CTTTTCTCTTTTTCCCTTCCTCCTCTTTTTCCCTTTTCTTCCTCCCTTCT
TCCCCCCTTTTTCCCCTTCCTCTATCTCTCTTTCTCTTCCTTCTCTTCTC
TCTCCCTTCCCTTTCCTTCCCTCTTCTTCCCCTCCCTCCTTCCCCTCTCC
TCCTCTCTACTTAACATTTTCCCCCCTCCTCCCCCCTCTCCCCATTTTTC
CTCCTTTTCCCCCTTTTTG

Query= MSMg01no362_p18.b1 MSMg01no362_p18.b1 CHROMAT_FILE:
MSMg01no362_p18.b1 PHD_FILE: MSMg01no362_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:33 2005
         (443 letters)



>mm_chr18_75677354_75678197
          Length = 844

 Score =  789 bits (408), Expect = 0.0
 Identities = 432/440 (98%), Gaps = 1/440 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccgcattacctgagggatttgcacatcggcatgttcctcgcaggccggaatgtc 64
           |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 644 gaattcccgcattacctgagggatttgcacataggcatgttcctcgcgggccggaatgtc 585

                                                                       
Query: 65  ctgggagagtggagagggtgacaaacaggcaggagaggcccgtctgccgtgcatcaccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctgggagagtggagagggtgacaaacaggcaggagaggcccgtctgccgtgcatcaccag 525

                                                                       
Query: 125 gcacgggggagtcaagggcaggactggcctcagactcagtttggtga-ttttttttttct 183
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 524 gcacgggggagtcaagggcaggactggcctcagactcagtttggtgatttttttttttct 465

                                                                       
Query: 184 cggagaagggtcagaaacagagtacaggagtacaagctctagaccatggctgccagccgc 243
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 464 tggagaagggtcagaaacagagtacaggagtacaagctctagaccgtggctgccagccgc 405

                                                                       
Query: 244 cagcaatccgttcaaccccacagcagataggcacacaggcctgtggcacccaggaaatga 303
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 404 cagcaatccgttcaaccccacagcagacaggcacacaggcctgtggcacccaggaaatga 345

                                                                       
Query: 304 gaactgtctgcagagactaccccaagatgggttatttcatcaagaacccatggcaagaac 363
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 344 gaactgtctgcagagactaccccaagatgggttatttcatcaagaactcatggcaagaac 285

                                                                       
Query: 364 ccaatggcaatttcaattagtgaagtcctactgtgcgccctaactagcatgcccatgtga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccaatggcaatttcaattagtgaagtcctactgtgcgccctaactagcatgcccatgtga 225

                               
Query: 424 agggagcattactggtacac 443
           ||||||||||||||| ||||
Sbjct: 224 agggagcattactgggacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 844
Length adjustment: 10
Effective length of query: 433
Effective length of database: 834
Effective search space:   361122
Effective search space used:   361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)