Query= MSMg01no363_f21.b1 MSMg01no363_f21.b1 CHROMAT_FILE:
MSMg01no363_f21.b1 PHD_FILE: MSMg01no363_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:03 2005
(412 letters)
>mm_chr18_58331747_58332558
Length = 812
Score = 721 bits (373), Expect = 0.0
Identities = 394/401 (98%), Gaps = 2/401 (0%)
Strand = Plus / Plus
Query: 9 ggaattcaaagcaatctcctgattattgctcaaggactaaaggagatcttgctggacaag 68
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ggaattcaaagcaatctcatgattattgctcaaggactaaaggagatcttgctggacaag 268
Query: 69 caag-gtgtggtgagagtttcataatcaattaggcaattaggaaaaaggatcaaacagga 127
|| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ca-gtgtgtgatgagagtttcataatcaattaggcaattaggaaaaaggatcaaacagga 327
Query: 128 agtctgaagcgacaagatggaagcaggcgtgagagtggactgggcaaagtggacaacctc 187
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 328 agtctgaagcgacaagatggaagcaggcgtgagagtggactaggcaaagtggacaacctc 387
Query: 188 tgactttcccatttgatttctcttccttttctttgaggttgggtcttatactatagcctg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgactttcccatttgatttctcttccttttctttgaggttgggtcttatactatagcctg 447
Query: 248 ggtagcctggaattcactatggagaacaggttggcctcaaacttttggtaattatacctg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggtagcctggaattcactatggagaacaggttggcctcaaacttttggtaattatacctg 507
Query: 308 tttcagtacttcaagtgtcaggactacaagaatgtaatgacctaatattagctgttattt 367
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 508 tttcagtacttcaagtgtcaggattacaagaatgtaatgacctaatattagctggtattt 567
Query: 368 ctttttaaaactaatttgcgtgtttggtgtgtgtgtgtgtg 408
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctttttaaaactaatttgcgtgtttggtgtgtgtgtgtgtg 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_f21.g1 MSMg01no363_f21.g1 CHROMAT_FILE:
MSMg01no363_f21.g1 PHD_FILE: MSMg01no363_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:03 2005
(392 letters)
>mm_chr18_58451372_58452163
Length = 792
Score = 503 bits (260), Expect = e-147
Identities = 318/340 (93%), Gaps = 7/340 (2%)
Strand = Plus / Minus
Query: 54 aacttgatagtgagaatgagggtaagtagacaaaacccaaaaccttgcttttctacatgc 113
|||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 792 aacttgcta-tgggaatgagggtaagtaggcaaaacccaaaaccttgcttttctacatgc 734
Query: 114 ttttatgtgagctagcatagaatctgtggtgtggatttagggtgggtcttctgccatcaa 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ttttatgtgagctagcatagaatctgtggtgtggatttagggtgggtcttctgccatcaa 674
Query: 174 ttgat-taaaaaaaaaaaaaaagagaaaacctccataccagtgcctacatgtttgtgtct 232
|||| |||||||||||||| | |||||||||| |||||||||| || ||| ||||
Sbjct: 673 gtgatctaaaaaaaaaaaaa-----acaacctccatatcagtgcctacgtgcttgggtct 619
Query: 233 tagttgattacagaagtaatcaagttagcttcatttggggcatgcctccgagtagtgttt 292
||| |||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 618 tagatgattacagaggtagtcaagttagcttcatttggggcatgcctcagaatagtgttt 559
Query: 293 cttgacctagtatttttgtgtcctggctacaatgccataagtagccttgatagtctgctc 352
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cttgacctagtatttttgtttcctggctacaatgccataagtagccttgatagtctgctc 499
Query: 353 acaccactgtgatattctgagtcatctcaggcccaaggca 392
||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acaccactgtgatattctgagtcatctcaggcccaaggca 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space: 299889
Effective search space used: 299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
