Query= MSMg01no365_a24.b1 MSMg01no365_a24.b1 CHROMAT_FILE:
MSMg01no365_a24.b1 PHD_FILE: MSMg01no365_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:28 2005
(435 letters)
>mm_chr18_61810252_61811087
Length = 836
Score = 791 bits (409), Expect = 0.0
Identities = 427/435 (98%), Gaps = 5/435 (1%)
Strand = Plus / Plus
Query: 4 ggaattctgagatttt---cgcataagccacaatgcctgttgacctggagccctgtgtgt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgagatt--acacgcataagccacaatgcctgttgacctggagccctgtgtgt 261
Query: 61 ggggaggaaagcctagctgttctgcctctgacttcttcctgaggcctgtttatttcagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggggaggaaagcctagctgttctgcctctgacttcttcctgaggcctgtttatttcagga 321
Query: 121 aggggcttcaggtcggtgtctgacaagccacagaagcagatgacagtgtggtactgatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aggggcttcaggtcggtgtctgacaagccacagaagcagatgacagtgtggtactgatgt 381
Query: 181 tgcatcttcatcattattattgtttaaaactctggctggtgttagctttccatttataac 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgcatcttcattattattattgtttaaaactctggctggtgttagctttccatttataac 441
Query: 241 aagtattccaacctaggtacataaaaggattccccttactctttacaataaaattgcagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aagtattccaacctaggtacataaaaggattccccttactctttacaataaaattgcagt 501
Query: 301 gaaaaacaggacatccgctgattaggtttggggcgggacagcagagcctgctctaccttc 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaaaaacaggacatccactgattaggtttggggcgggacagcagagcctgctctaccttc 561
Query: 361 tggtcagcttttgtggctggaaatgatcaccttggttggaggaccaggaatggggatagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tggtcagcttttgtggctggaaatgatcaccttggttggaggaccaggaatggggatagg 621
Query: 421 acattctagatttgc 435
||||||||||||||
Sbjct: 622 gcattctagatttgc 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space: 352302
Effective search space used: 352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_a24.g1 MSMg01no365_a24.g1 CHROMAT_FILE:
MSMg01no365_a24.g1 PHD_FILE: MSMg01no365_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:28 2005
(466 letters)
>mm_chr18_62012463_62013327
Length = 865
Score = 878 bits (454), Expect = 0.0
Identities = 463/466 (99%), Gaps = 1/466 (0%)
Strand = Plus / Minus
Query: 1 tctggggtgcactgtgtgtttctgtgtgtgctgaagtctcagaaacaggacaggctttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tctggggtgcactgtgtgtttctgtgtgtgctgaagtctcagaaacaggacaggctttct 606
Query: 61 ctaccgagtgaaagcctaatatagggacaagtgctagaagagagagatctaacatgcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctaccgagtgaaagcctaatatagggacaagtgctagaagagagagatctaacatgcctc 546
Query: 121 caccatagttttgcagattgggatatccagaaggatgagggagaagttgttaaagacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caccatagttttgcagattgggatatccagaaggatgagggagaagttgttaaagacaaa 486
Query: 181 cgagtgggcatgtgagcggtttccaggggaacaaaggcccttggcttagctcagaaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgagtgggcatgtgagcggtttccaggggaacaaaggcccttggcttagctcagaaataa 426
Query: 241 aagcatctacccgtgcacccaccaagtatatttccttgaagtatcctctgcagagatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aagcatctacccgtgcacccaccaagtatatttccttgaagtatcctctgcagagatgat 366
Query: 301 tgcagactctgcaagggatccctgactagagggcatagtagatgcttcctgggctcctaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgcagactctgcaagggatccctgactagagggcatagtagatgcttcctgggctcctaa 306
Query: 361 ggaatggagagaaccaaagcaagaactgaacgacggagaaaaacataccagaggacagaa 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 305 ggaatggagagaaccaaagcaagaactgaacgacggag-aaaacataccagaggacagaa 247
Query: 421 aaaggacaaatcacctagttggggttttttttctcttagctataag 466
||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 246 aaaggacaaatcaccgagttgggtttttttttctcttagctataag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 865
Length adjustment: 10
Effective length of query: 456
Effective length of database: 855
Effective search space: 389880
Effective search space used: 389880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
