BAC Information

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BAC

Clone NameMSMg01-365D13
Chromosome18 (Build37)
Map Location 61,859,893 - 61,999,893
singlet/doubletdoublet
Overlap genePcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3
Upstream geneNdst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b
Downstream geneSh3tc2, Adrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365D13.T7 (MSMg01no365_d13.b1)MSMg01-365D13.TJ (MSMg01no365_d13.g1)
ACCAG473230AG473231
length748758
length of high quality
(start - end)		580 (39 - 618)340 (56 - 395)
definitionCHROMAT_FILE: MSMg01no365_d13.b1 PHD_FILE: MSMg01no365_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:40 2005CHROMAT_FILE: MSMg01no365_d13.g1 PHD_FILE: MSMg01no365_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,999,320 - 61,999,893)(61,859,893 - 61,860,232)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
ACTTGGCTAAAAGGATTTCCTTATCTAACATCTATTAACCATCTATCTAT
CGATCGATCATTATCTCTGACTCTCTCTTTATCATAGTACTTACAGTCAT
CTTTGTTATCACTAGTATTAAGGGCCCCTTAGGAAGACTTGGGGACATGC
TGGCAGTCCTCAAAATGACCTTTCCTTGTGGGCAATGAGGGTGTGGGAAG
AGAAACCTCTGAATCCCCTGCGTGTGTCCAAGGAAATCCCATGAGTTTGC
ATCAGGACCCATGAAGGAATAACCAAGATCGTTGGGTAAACTCTCATATG
GTTGTGGATGCCCCTGGGCAGCCTCCCAACCAACCACAGGGCAATGGAAA
GAGACACCAACACCACCAATATACCCAGGACAGGTTCACCCACCAGCCGT
ACTCTACAATAAACCCAATCTTGATGCTTCTACTTCATGTCCTGGTTTCC
ACAGGCAGGAGGGAAACACTACCACCCTACCTGTGCCAGATGTGTACGCT
GCCACCAGATGTTCACTGAGGGGGAGGAGATGTATCTCACAGGTAAGCAG
ATCTGACCCTCTCTCTCTAAGGCATTCTGGTATGCGCCCGGCTGGTAAAG
AGATCCGACCTCCTTCCCATTCTGGGATATCTTTGCTGGAGGGTTTTCCT
AAGGGTGGAATTATTCTCTCCTCTCTTGGTGGAAGACGAAAAATGCGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACCACAACTGTGGTTGGCTGCATAGAGCACGCAGAAGATAGAGCC
CTATAAAACTTCAGTCACAGATTGGGGGGAGCTCACGGGGCCCCAGCCCA
TCCTAGGAAGCTAAAAGCAAGCCAGAGCTGCTGGAGAAGAGGAAGCCACT
GTGGTCACCAGAGAGTGACCCATACTCTAGAGGACAGTTCCACACCAATG
CCCCTGTGTGCAGCCCTGCTTAAAACCCAGGGGATGGCAAAACAAACACT
AAAACAAGGCAGAAGACAGAAGAATGAGATGAGGTCTTGGTGGGAGTGGA
AGAGAGGTGAGTAAGAAAGAGAGGAGGGAAGAGGAGGAGGGAGGANNNNN
NNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGGNNTNTG
NTGTTGGTTTGTGGTTTTTTTGGTTTTTTTGTTTTTTTTTTTTTTTTTTG
TTTGTTTTTTGTGGTTGGTGGTTTGTTGTTTGTGTGTTTGTTTTTTGGGG
TTGTGTGGGTTGTGTGTGTGTTGTGATGTTGTTTTCGCGTTTTTTGTGTG
TGTTTGTTTTGTTGGCGGTTGTGGGTTGGGTGTGTGGGGGTTGTTTTGTT
GGTGAGTTTGGTTTTTTGCGTTCTTGTTGGTTGCTTTCTGCGCCTTTTTT
TCTTCACGCCACTCTTCGTGCCATCTTCGTTAGGCATGCTCACCGCTGTT
CATTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_d13.b1 MSMg01no365_d13.b1 CHROMAT_FILE:
MSMg01no365_d13.b1 PHD_FILE: MSMg01no365_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:40 2005
         (580 letters)



>mm_chr18_61999116_62000095
          Length = 980

 Score = 1056 bits (546), Expect = 0.0
 Identities = 567/574 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaacttggctaaaaggatttccttatctaacatctattaaccatctatctatcg 64
           ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gaattcaaacagggttaaaaggatttccttatctaacatctattaaccatctatctatcg 719

                                                                       
Query: 65  atcgatcattatctctgactctctctttatcatagtacttacagtcatctttgttatcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 atcgatcattatctctgactctctctttatcatagtacttacagtcatctttgttatcac 659

                                                                       
Query: 125 tagtattaagggccccttaggaagacttggggacatgctggcagtcctcaaaatgacctt 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tagtattaagggcccctcaggaagacttggggacatgctggcagtcctcaaaatgacctt 599

                                                                       
Query: 185 tccttgtgggcaatgagggtgtgggaagagaaacctctgaatcccctgcgtgtgtccaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tccttgtgggcaatgagggtgtgggaagagaaacctctgaatcccctgcgtgtgtccaag 539

                                                                       
Query: 245 gaaatcccatgagtttgcatcaggacccatgaaggaataaccaagatcgttgggtaaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaaatcccatgagtttgcatcaggacccatgaaggaataaccaagatcgttgggtaaact 479

                                                                       
Query: 305 ctcatatggttgtggatgcccctgggcagcctcccaaccaaccacagggcaatggaaaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctcatatggttgtggatgcccctgggcagcctcccaaccaaccacagggcaatggaaaga 419

                                                                       
Query: 365 gacaccaacaccaccaatatacccaggacaggttcacccaccagccgtactctacaataa 424
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 418 gacaccaacaccaccaatatacccaggacgggttcacccaccagccgtactctacaataa 359

                                                                       
Query: 425 acccaatcttgatgcttctacttcatgtcctggtttccacaggcaggagggaaacactac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 acccaatcttgatgcttctacttcatgtcctggtttccacaggcaggagggaaacactac 299

                                                                       
Query: 485 caccctacctgtgccagatgtgtacgctgccaccagatgttcactgagggggaggagatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 caccctacctgtgccagatgtgtacgctgccaccagatgttcactgagggggaggagatg 239

                                             
Query: 545 tatctcacaggtaagcagatctgaccctctctct 578
           ||||||||||||||||| ||||||| ||||||||
Sbjct: 238 tatctcacaggtaagcaaatctgactctctctct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_d13.g1 MSMg01no365_d13.g1 CHROMAT_FILE:
MSMg01no365_d13.g1 PHD_FILE: MSMg01no365_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:40 2005
         (340 letters)



>mm_chr18_61859693_61860432
          Length = 740

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accacaactgtggttggctgcatagagcacgcagaagatagagccctataaaacttcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accacaactgtggttggctgcatagagcacgcagaagatagagccctataaaacttcagt 260

                                                                       
Query: 61  cacagattggggggagctcacggggccccagcccatcctaggaagctaaaagcaagccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagattggggggagctcacggggccccagcccatcctaggaagctaaaagcaagccag 320

                                                                       
Query: 121 agctgctggagaagaggaagccactgtggtcaccagagagtgacccatactctagaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgctggagaagaggaagccactgtggtcaccagagagtgacccatactctagaggac 380

                                                                       
Query: 181 agttccacaccaatgcccctgtgtgcagccctgcttaaaacccaggggatggcaaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttccacaccaatgcccctgtgtgcagccctgcttaaaacccaggggatggcaaaacaa 440

                                                                       
Query: 241 acactaaaacaaggcagaagacagaagaatgagatgaggtcttggtgggagtggaagaga 300
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 acacaaaaacaaggcagaagacagaagagtgagatgaggtcttggtgggagtggaagaga 500

                                                   
Query: 301 ggtgagtaagaaagagaggagggaagaggaggagggagga 340
           |||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 ggtgagtaagaaagggaggagggaagaggaggagggagga 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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