Query= MSMg01no365_j23.b1 MSMg01no365_j23.b1 CHROMAT_FILE:
MSMg01no365_j23.b1 PHD_FILE: MSMg01no365_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:10 2005
(283 letters)
>mm_chr18_86725331_86726011
Length = 681
Score = 509 bits (263), Expect = e-148
Identities = 272/275 (98%), Gaps = 2/275 (0%)
Strand = Plus / Plus
Query: 9 gaattccttgattctctcgaggtggcaagcaactcagaggaggaatgtgtcaacttatga 68
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattccttgattc-ct-gaggtggcaagcaactcagaggaggaatgtgtcaacttatga 266
Query: 69 aatcccaactttactgaactcattacagctgctgaaagagaacggccctgtcatatcaag 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aatcccaactttactgaactcattacagctgctgaaagagaacggccctgtcatatcaag 326
Query: 129 aatcagaggatacgtagtattcagggacatagaatacatggtgcctgcattgacttggac 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatcagaggatacgtagtattcagggacatagaatacatggtgcctgcattgacttggac 386
Query: 189 gaagttgatgggatgttgatgttggattaacgtaagggaagggatggaagggtctggcat 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaagttgatgggatgttgatgttggattaacgtaagggaagggatggaagggtctggcat 446
Query: 249 acacatattagtagatgttgacattagttatttca 283
|||||||||||||||||||||||||||||||||||
Sbjct: 447 acacatattagtagatgttgacattagttatttca 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 681
Length adjustment: 9
Effective length of query: 274
Effective length of database: 672
Effective search space: 184128
Effective search space used: 184128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no365_j23.g1 MSMg01no365_j23.g1 CHROMAT_FILE:
MSMg01no365_j23.g1 PHD_FILE: MSMg01no365_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:10 2005
(483 letters)
>mm_chr18_86926370_86927250
Length = 881
Score = 884 bits (457), Expect = 0.0
Identities = 476/483 (98%), Gaps = 2/483 (0%)
Strand = Plus / Minus
Query: 1 ataagatttcataagaaataaggaaaaaaattataaacatccacacagtgctctgggtta 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 ataagatttcataagaaataaggaaaaaaattataaacatcaacacagtgctctgggtta 622
Query: 61 tgaaattccctcccccaaatatgacaacgcttttctaataacttaaggaactgcctgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaattccctcccccaaatatgacaacgcttttctaataacttaaggaactgcctgtca 562
Query: 121 atcagcactgcctgcattattctcttcctcacaatatctcctttattcattgcgtatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcagcactgcctgcattattctcttcctcacaatatctcctttattcattgcgtatttt 502
Query: 181 caaaacaatcatattagcgactctgctagccccctgtgcactcaaaatgaccaaagaccc 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaacaatcatattagcaactctgctagccccctgtgcactcaaaatgaccaaagaccc 442
Query: 241 cctgtagcattattagggagatattaaagccattacaaaggattctctgatgacattttg 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 cctgtagcattattagggagatattaaaaccattacaaaggattctctgatgacattttg 382
Query: 301 taacgcagagagcattgaaatcatcagttgcaaaacaacagatttaaaagattggaaagc 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacgcagagagcactgaaatcatcagttgcaaaacaacagatttaaaagattggaaagc 322
Query: 361 atttcgcttccagctagagtaaaataaagaaaaaaaaatatcctgatgtgaacaactcag 420
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 attttgcttccagctagagtaaaataaag--aaaaaaatatcctgatgtgaacaactcag 264
Query: 421 caacgtgtaaccttgtatatgcaactagatattgataaataggagactagatcagcttgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caacgtgtaaccttgtatatgcaactagatattgataaataggagactagatcagcttgc 204
Query: 481 ttt 483
|||
Sbjct: 203 ttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 881
Length adjustment: 10
Effective length of query: 473
Effective length of database: 871
Effective search space: 411983
Effective search space used: 411983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
