BAC Information

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BAC

Clone NameMSMg01-366F08
Chromosome18 (Build37)
Map Location 44,756,896 - 44,757,270
singlet/doubletsinglet
Overlap genenone
Upstream geneJakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
Downstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366F08.T7 (MSMg01no366_f08.b1)MSMg01-366F08.TJ (MSMg01no366_f08.g1)
ACCAG474072AG474073
length752764
length of high quality
(start - end)
387 (73 - 459)414 (82 - 495)
definitionCHROMAT_FILE: MSMg01no366_f08.b1 PHD_FILE: MSMg01no366_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:09 2005CHROMAT_FILE: MSMg01no366_f08.g1 PHD_FILE: MSMg01no366_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGTTTTCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCGCGGAATTCTAACATTTTCAATAAAACTCATCGCTTCCAGTATTGAAC
TTTCAAAACTTCAAGGAAACAAACAAACAAACAAACAAACAACCCAGCAG
GTATGAAAGACACGGGGCAGGACAAATGGCTTAGAATTTAAGAGCAGGTA
CTGTTGAGCACCCGTGTCAGACAGCACAGAACTGCCTGTAACTCCAGTTC
CAGGGGATCTAACACCTGAAGCCTCTGAGGCACCAATCCTCATGTGAACA
TAGCCATATTCACAGGCACACACATATTATCACAAATAATTAGAATAAAT
ACTTTAATACTTTGTTAAAGATGAATGGTACGTCCATTGTCTGGGGGTGG
GGGAGGAGCTGGACTCTTTTCCAGACTTGCATTGGTAAGTTCTACTTAAT
CCGGTTAACTTGGCATGACTGCATACCATTCTACCCTCAGTGCTGGAATC
AGGGGGCCCACTCAACTGACTTGCAGGATCCATGCTCCTTAACTAGTTTG
CCAGATACCAGATCACCTCATAGGCAGGACTCCCCATGTCCACTCCCCTT
GACTATGTCTGTCATCTTTCAGTGGCCCCTCAAAGTCCCACTTTTTGTAC
TTTCCATTTTCTAACACCTTTACTTGGTCACCCTATGACCTGCCTCCCTA
TCTCCCCTATTTCTTCTTTCCTCTCTTCTTCCTTTCACGCCCTTTTTTTT
TG
NNTTCTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATAGGACATGAGAGAT
GTCTCAGTGCTTAAGAGCACTAGTTGCTCTGACAGAAGACCTGGTTCAGT
TCCTAACACTCACATGGTAGGGAGCTCTACTTCCTACATCTGACTAACAA
CCAGCTGTAATTCCAGTCCCAGGGGATCCAACACCCTCTTTTGCCCAGTA
GGGGTGCTAGGTATAAAGTGTTGCAATATATACATATGTACAATATATAC
ACATGTACATATATACACAGATACTATGTATTTATATACATACATATATA
TACACATACATATACATGCATATACACATACATACATACATACATACATA
TGTACATCACATATATATATATATATATACACATATATACATAGACACAT
ATATACATATGCCAGAGCTCTTATACACATAAATAAGTTAACCTTAAATA
CAGAAGAAAATTCTCTGTCATCTCGAATATGGGCACTCTAGGCTTGCCTC
ACAGTGAAGCCCTCCCCTTTGCCTCATCCTGCTTCCTGTGCCTTTCCTAT
CTATGTGGAGGTATTTAATATCTTGTACCCTAAAATCTGCACTGTTTGGG
GACGGCGGGGTAATAAATCACCATTTCCTTTGGTTTCTTGGATATGGGTC
CCCTCATTTTAACTCGTTTTTGGTTGAAAATAAAATTTTTCCCCCTTTCT
CATATACCTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_f08.b1 MSMg01no366_f08.b1 CHROMAT_FILE:
MSMg01no366_f08.b1 PHD_FILE: MSMg01no366_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:09 2005
         (387 letters)



>mm_chr18_44756684_44757470
          Length = 787

 Score =  625 bits (323), Expect = 0.0
 Identities = 366/387 (94%), Gaps = 12/387 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaactcatcgcttccagtattgaactttcaaaacttcaaggaaacaaacaaacaaac 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ataaaactcatcacttccagtattgaactttcaaaacttcaaggaaacaaacaaacaaac 272

                                                                       
Query: 61  aaacaaacaacccagcaggtatgaaagacacggggcaggacaaatggcttagaatttaag 120
           ||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 273 aaacaa----cccagcaggtatgaaagacacggggcagggcaaatggcttagaatttaag 328

                                                                       
Query: 121 agcaggtactgttgagcacccgtgtcagacagcacagaactgcctgtaactccagttcca 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agcaggtactgttgagcacccatgtcagacagcacagaactgcctgtaactccagttcca 388

                                                                       
Query: 181 ggggatctaacacctgaagcctctgaggcaccaatcctcatgtgaacatagccatattca 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggggatctaatacctgaagcctctgaggcaccaatcctcatgtgaacatagccatattca 448

                                                                       
Query: 241 caggcacacacatattatcacaaataattagaataaatactttaatactttgttaaagat 300
           ||||||||||||||| ||| |||||||||||||||||||||||        |||||||||
Sbjct: 449 caggcacacacatataatcgcaaataattagaataaatacttt--------gttaaagat 500

                                                                       
Query: 301 gaatggtacgtccattgtctgggggtgggggaggagctggactcttttccagacttgcat 360
           |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 501 gaatggtatgtccattgtctgggggtgggggaggagctgggctcttttccagacttgtat 560

                                      
Query: 361 tggtaagttctacttaatccggttaac 387
           |||||||||||||||||||||||||||
Sbjct: 561 tggtaagttctacttaatccggttaac 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)