BAC Information

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BAC

Clone NameMSMg01-367I01
Chromosome18 (Build37)
Map Location 64,176,824 - 64,177,239
singlet/doubletsinglet
Overlap genenone
Upstream gene9430028L06Rik, 9030411M15Rik, LOC627792, Txnl1, Wdr7
Downstream geneLOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367I01.T7 (MSMg01no367_i01.b1)MSMg01-367I01.TJ (MSMg01no367_i01.g1)
ACCAG474955AG474956
length691734
length of high quality
(start - end)
510 (13 - 522)416 (84 - 499)
definitionCHROMAT_FILE: MSMg01no367_i01.b1 PHD_FILE: MSMg01no367_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:41 2005CHROMAT_FILE: MSMg01no367_i01.g1 PHD_FILE: MSMg01no367_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCAAGAGGATCCGCGGAATTCCTGATTTTCTCAGAACTTTTATCATG
AATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGCGGATTACATTGATGG
ATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTGAGGATTTTTGCATCGATATTCATAAGAGATAGTGGTCTGAAGT
TCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTG
GCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTGTGAAA
AAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACT
CTGCACTAAACCCGTCTGGTCTTGGGCTTTTTTTGGCTGGGAGACTATTT
ATAACTGCTTCTATTTCTTTAGGCGATATGGGACTGCTTATAAGGTCAAC
TTGTTCCTGATTCAACTCTGTTACCTGTTATCTGTCCAGAAATTTGTCCA
TTTCTTCCAGGCTTTCTTGCTTTGTTGACTATTACCCCTTGTACACGGAC
CCGACGTTGTTTTGTACTTCTCCTTTACCTTTTTTTATTTC
GACGTTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTCCTCTGGTGAT
GTAATCTACACGGTCAGGATTGGTCAACCTCTCAGGAATGATAGTGATCG
CTCAGAAAGACACGGGCAGCACGGCGTATTGCCCGCATCTGTTCGGGATT
TCTATGAATAATTTCGGAATTTACATAACATCAAGATTTGATTTGATGCC
GGGTGTACTGTTTATGCCAAAGTCAACATCTATAGAAATAATTCAGCTTT
CAGCTATAGACTGAAATAAATCACTACTTAGGCAGTCAAAAGAGACCTCC
AAGAAGTAAATTTTGCTGAATCTCCATTTTCAAGAGAGAATTATGGAGGA
ATTTCAAGGGCAAACTCTCCTCCTGCCTTCTTTTCTCTATCCTTGCCCCT
GCCTCGGTAATGGTTACTCTCTCACTGTAACCAAGGTAACCAGGGCCTAA
GCAGAAAGGATCCCTCTCTGTCAGAGGCTGGATGCTCAGCACGGTTTAAC
CTCATAGGGGACCTGAATGATCAGCAGTACAGAATCCTTTCTCTCACATC
TGCCAGGGCTGATTGACAGTTGACATACTGGATGTGTTTTCAGTATACAC
AGGACGATCCATTACTGTTGATAATCTTATCATTTTTTGTGACCCTTTCT
AATTACTGACTTTAATGTCCCTTGGGCCTTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_i01.g1 MSMg01no367_i01.g1 CHROMAT_FILE:
MSMg01no367_i01.g1 PHD_FILE: MSMg01no367_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:41 2005
         (416 letters)



>mm_chr18_64176624_64177439
          Length = 816

 Score =  766 bits (396), Expect = 0.0
 Identities = 411/416 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctcctctggtgatgtaatctacacggtcaggattggtcaacctctcaggaatgata 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ctttctcctctggtgatgtaatctacatggtcaggattggtcaacctctcaggaatgata 260

                                                                       
Query: 61  gtgatcgctcagaaagacacgggcagcacggcgtattgcccgcatctgttcgggatttct 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gtgatcgctcagaaagacacgggcagcatggcgtattgcccgcatctgttcgggatttct 320

                                                                       
Query: 121 atgaataatttcggaatttacataacatcaagatttgatttgatgccgggtgtactgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaataatttcggaatttacataacatcaagatttgatttgatgccgggtgtactgttt 380

                                                                       
Query: 181 atgccaaagtcaacatctatagaaataattcagctttcagctatagactgaaataaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgccaaagtcaacatctatagaaataattcagctttcagctatagactgaaataaatca 440

                                                                       
Query: 241 ctacttaggcagtcaaaagagacctccaagaagtaaattttgctgaatctccattttcaa 300
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacagaggcagtcaaaagagacctccaagaagtaaattttgctgaatctccattttcaa 500

                                                                       
Query: 301 gagagaattatggaggaatttcaagggcaaactctcctcctgccttcttttctctatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagagaattatggaggaatttcaagggcaaactctcctcctgccttcttttctctatcct 560

                                                                   
Query: 361 tgcccctgcctcggtaatggttactctctcactgtaaccaaggtaaccagggccta 416
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcccctgcctcgttaatggttactctctcactgtaaccaaggtaaccagggccta 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)