BAC Information

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BAC

Clone NameMSMg01-367M04
Chromosome18 (Build37)
Map Location 89,159,384 - 89,159,618
singlet/doubletsinglet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367M04.T7 (MSMg01no367_m04.b1)MSMg01-367M04.TJ (MSMg01no367_m04.g1)
ACCAG475152AG475153
length771875
length of high quality
(start - end)
500 (50 - 549)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no367_m04.b1 PHD_FILE: MSMg01no367_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:01 2005CHROMAT_FILE: MSMg01no367_m04.g1 PHD_FILE: MSMg01no367_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGAAATTCTTAGACAAATGGATGGATGTGGAGTATATCAT
CCTGAGTGAGCTAAGCCAATCACAAAAGAGCACACATGATATGCACTCAC
TGATAAGTGGATATTAGCCCAGAAACTCGGAATACCCAAGATACAATTCA
CAAAACACATGAAACTGAAAAAGAAGGAAGATCTAAGTATAGATATCTTG
GTCCTTCTCAGAAGGGGGAACAAAATACCCATAGAAGGAGTTACAGAGAC
ACAGTGTGAAGCAGAGACTGGAGGAATGACCATCTAAAGATTTCCCTACC
TGGGGATCCATCCCATAAACAACCATGAAAAACAGACACTATTGTGGATG
CCAAGAGTTTGCTGACAAGAGCCTGAAATAGTGTCTCCTGAGAGGCTCTA
CCAGTGCCTGACAAATATAGAAGTGGGTGCTCACTGTCATCCATTGGACG
ATGCACAGGGTCCCCAATGAAAGAGATAGAGAAAGTATCCAAGGAGCTGA
TGGGGTTTGCAGCCCCATAGCATGAACAGCTACATGAACTAACCAGTATC
TTCTGAGTTCCCTGGTGACTACACCACCAACCAAATAAACACATAGCGGG
TGCTTATTGACTCTAAGCTGCATATGTAAGCTGGAGGAAGGCCCTATGTC
GGTCATCTCCGGGTACCAAGAGCTCCTTTCGGTCCCGGAAAGGTTATTAT
GCCCCTATGTATACCGTCATG
TGTGTGGTTTTAAAGTTGAACATAGTGCGTNTNTGNGGGCGAGTGTTCGC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTTTTGCCCTTACAATTTCAAGA
AACAGTTATACTGGCTCAGGTTATTTTTTAAAAAGAGTAAAATTATAATT
CATCAAAATCTAACTTGTATTTCTGTCCATGAAACCTTTTACATTAATGT
CATTCTCAGAGGTTTTTCCATCCATTGTTTTGGTTTTAGTAATTTCTTTA
GGATCTTCTCTCTATGGAATCATGCTATTTGCAAATAAACAGTGTTATGA
ATAAAGACAGGCTTATTTCTGTTTTGTCAATTTAGATATCCTCTAACTTA
TTGATATTGCCCATTGTTCTGGCTTGAACATGGTGTACTACTGACAGTGG
ACATGCTGTTATCCTTGTTCTTCCTCCTGTGTATAATTGTATTCAGTCTG
AACGATTACATAATTTGAGCTCTCCATTTCGTCTAAGCGTCCTTATATAT
AGCCGACAGTAATCCTACATCATTCCCCAATTTGATATTATTTTTTTTGA
TTACGATTTACATTTTTGCCCAACACCTTTAACATGGCCCTTATAATAAA
CAATAATATTATACTTACTATTGACATTTACTTTTTTATATTATATTCTA
TTTTTTTTACTCTTTTATTATTATTTTCCCTCTCCCCTTCACCCATTCTC
AGATTCCATCTTTCTTTACTTCATCTTTTTCCCTCATCACCCCTTACTAT
TGTTCTCTCTCTCTTCTTCATNCTGCTATTGCTCACATTCATATCTCCAT
ACTCTCTGTCTCTCTCTACCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_m04.g1 MSMg01no367_m04.g1 CHROMAT_FILE:
MSMg01no367_m04.g1 PHD_FILE: MSMg01no367_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:01 2005
         (234 letters)



>mm_chr18_89159184_89159818
          Length = 635

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%), Gaps = 1/235 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttttgcccttacaatttcaagaaacagttatactggctcaggttatttttt-aaaaa 59
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tccttttgcccttacaatttcaagaaacagttatactggctcaggttatttttttaaaaa 260

                                                                       
Query: 60  gagtaaaattataattcatcaaaatctaacttgtatttctgtccatgaaaccttttacat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtaaaattataattcatcaaaatctaacttgtatttctgtccatgaaaccttttacat 320

                                                                       
Query: 120 taatgtcattctcagaggtttttccatccattgttttggttttagtaatttctttaggat 179
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgtcgttctcagaggtttttccatccattgttttggttttagtaatttctttaggat 380

                                                                  
Query: 180 cttctctctatggaatcatgctatttgcaaataaacagtgttatgaataaagaca 234
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 cttctctctatggaatcatgctatttgtaaataaacagtgttatgaataaagaca 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space:   140850
Effective search space used:   140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)