BAC Information

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BAC

Clone NameMSMg01-370L17
Chromosome18 (Build37)
Map Location 86,202,934 - 86,203,369
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039765, LOC665382, LOC545269
Downstream geneLOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370L17.T7 (MSMg01no370_l17.b1)MSMg01-370L17.TJ (MSMg01no370_l17.g1)
ACCAG477410AG477411
length789776
length of high quality
(start - end)		453 (34 - 486)336 (67 - 402)
definitionCHROMAT_FILE: MSMg01no370_l17.b1 PHD_FILE: MSMg01no370_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:52 2005CHROMAT_FILE: MSMg01no370_l17.g1 PHD_FILE: MSMg01no370_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATGTCA
TTACATTCATGAAAAGAGTGCTTGTCTCTGGTGTAGAAAAGCCCAGCATT
GCATTTCTGAGTACATAGCTGATCTGCCCTCTCCTTTTATGTGGTGGTCA
TTTACTTAATAATATTTCACAGGAAACTGTGTTTCTTCTGGTATTTAACT
GTATATGACTGTTTCCTTAATGGACTTTTTTTTCCAATCAGGAATAGGTA
AAGATGCTTTTATTATTTTTTCAAATGCTAATGTTCTCCATTCCCTATCA
AGATGCTTTTTTAAATGCACTTTTTCATAGAATAAATAAAACTTGGTTAG
TTACCTGTGTTAATATTTAAAATTATTGTTATTTATTCACTTTACATCCT
GAGGTGTTTCCCCCATCACCGTTTCTCCCACCATCTTTCCCTTCTCTCTG
AGAGAATTTTTCCTGGAAGGTTTAAAACTTATGCCTAGGACAGGTGAATA
CAAACATAGCATCATGAGCTAGTAGGTTGCTCTGGGTGTGTACTAAATGA
TAAACATTTGTCTTAACTACGCAAAACAAAATATTTGACTGAATTTTAAT
AATAACTTACTATACCCCAGTGATTTCTTTTTGAACTTGAGAAACCAAAA
TTGTCTCTTATTTGCCACATGAATTTTATTAAAAAATACACCTTTGTGAC
TAATATCCTTAACTACTGTCTTAATTTCTACTCGTCATCTCTCCCTTTAT
CCTTCAGTTTCCATGACCCCTCTTCTCTTTATAAATCCN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTAAGCTTTATTGGGTCATCTTAGAAGGAGGAT
GAAAGACAGTAAGGGTGAGTACAATACAAACTATGGAAAATAAATTCTAG
AGATTTCAGAGGAGAACAACATTAGTAACTCAGCTATTCGCCATTCCTGT
GATGTTTTCTGCCTTTTTCCTAAGAACTTGCCAGGGGTTCAATTAAAAGG
TAAAGAAGTAATTTCTAATTTCTATGGTAGAGTCAATTTCAAGGCAGCAT
TATATTTAGCCTGTGGCATAGTTGTGTAAATATATATGTGTAAAAAGTTA
GTTATATAGTTAGACATATAGCTATATAGTTGTTATAAAATTGTTATAGT
GCTGTTATATGGTTATATAGTTAGTTTTATATTANNATNTTTTTTTTTTT
TTTTNNTTTTTTTNNTTTTTNTTTTTTTTTTTTTTANTTTNTTTTATTTN
TTTTTTTTTTNAATTTTTATTTTTTTATTTTTTATTTATNATTTTTTTTT
TTTTAANAANATATATATNTTTTTTTTTNTTNATTTTATAATTTTTATTT
TTTTTTATTTTATTTTTTTATATATTTATTTTTTTTTTTATTTTTTTAAT
ATTTTTNATTTTTTTTTTTTTAATAATAAAAATATTTTTTAATATTATAT
TTATTATATNTTTTATTTTTTATTTTTAATTATTTTTTTTATTAATTTTT
TTTTTATTTTTATATTTTTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_l17.b1 MSMg01no370_l17.b1 CHROMAT_FILE:
MSMg01no370_l17.b1 PHD_FILE: MSMg01no370_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:52 2005
         (453 letters)



>mm_chr18_86202917_86203769
          Length = 853

 Score =  783 bits (405), Expect = 0.0
 Identities = 432/449 (96%), Gaps = 13/449 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgtcattacattcatgaaaagagtgcttgtctctggtgtagaaaagcccagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaattccatgtcattacattcatgaaaagagtgcttgtctctggtgtagaaaagcccagc 394

                                                                       
Query: 65  attgcatttctgagtacatagctgatctgccctctccttttatgtggtggtcatttactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 attgcatttctgagtacatagctgatctgccctctccttttatgtggtggtcatttactt 334

                                                                       
Query: 125 aataatatttcacaggaaactgtgtttcttctggtatttaactgtatatgactgtttcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aataatatttcacaggaaactgtgtttcttctggtatttaactgtatatgactgtttcct 274

                                                                       
Query: 185 taatggacttttttttccaatcaggaataggtaaagatgcttttattattttttcaaatg 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 273 taatggacttttttttccaatcaggagtaggtaaagatgcttttattattttttcaaatg 214

                                                                       
Query: 245 ctaatgttctccattccctatcaagatgcttttttaaatgcactttttcatagaataaat 304
           |||||||             ||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ctaatgt-------------tcaagatgcttttttaaatgcactttttcatagaataaat 167

                                                                       
Query: 305 aaaacttggttagttacctgtgttaatatttaaaattattgttatttattcactttacat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 aaaacttggttagttacctgtgttaatatttaaaattattgttatttattcactttacat 107

                                                                       
Query: 365 cctgaggtgtttcccccatcaccgtttctcccaccatctttcccttctctctgagagaat 424
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 106 cctgaggtgtttcccccatcaccgtttcccccaccatctttcccttctctctgagagact 47

                                        
Query: 425 ttttcctggaaggtttaaaacttatgcct 453
           |||||||||||||||||||||||| ||||
Sbjct: 46  ttttcctggaaggtttaaaacttaggcct 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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