BAC Information

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BAC

Clone NameMSMg01-370O23
Chromosome18 (Build37)
Map Location 29,748,488 - 29,748,756
singlet/doubletsinglet
Overlap genenone
Upstream geneBC051408, LOC100040930, 4930578E11Rik
Downstream geneLOC666073, Pik3c3, LOC666094, LOC666100, EG666111, EG666114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370O23.T7 (MSMg01no370_o23.b1)MSMg01-370O23.TJ (MSMg01no370_o23.g1)
ACCAG477563AG477564
length858825
length of high quality
(start - end)
276 (41 - 316)250 (72 - 321)
definitionCHROMAT_FILE: MSMg01no370_o23.b1 PHD_FILE: MSMg01no370_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:08 2005CHROMAT_FILE: MSMg01no370_o23.g1 PHD_FILE: MSMg01no370_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTAAAGTATATAGCTATAATTTTATTGGTTTTGGTAAAAAAAAAGAAAA
AAAGGCAAANTCTTTCTTTTCCTCGGCTTCTCATTTTCTTCCACTCAGAG
AATTATCTGAAATGGAGGAGATTTATGGGAAGATTTTGTGGAAGCTTACA
AGCGATCCTCCTATGGGGACATCTCTGTCCCCACGAGGGCTATAGAAAGG
TAATTTCGTTGTAATTTTGAAGAAAGTAGAAGGGATTAGGTAAAAAGTGG
GGAGGGGTGAAATGAATTGCTCCTTTGCCTCTCTATGTAAATTAAGCCTC
CTTTTATGTAAGTTTTTGCTTATTCCATTTCTCACTCCTCCATCCCTCCC
CTTCCTCTTCTTCCCCGATTCCCCCCATTTTTTCTCTCTTTCTTTTTCTC
TCTTTCTTCTTCCTTCATTTATCCACCTATATCTGCCTCTTTTTTTTCTC
ACTTTTCCCCCTTTCTCTTTTTCGCCCCTACTTTCTCCTTATTGCTGTAC
TCTTTGTCCTCACCCTCTACTACCTCCAGTTGTTTTTCGCTCTTTCCCCT
TTTGCCCGCCGTCTTCTTCCCTTCTCTCTCCCACTTGTTTCCTCGACGCT
CCTCACGTCTTTTTTCTTCTCTCTTCCAACCTACATTTGCATTTAGTCCC
CTGTCTTATCATCTCCTCTGCTTTTACCCGCTCTGCTATACCTCTTCCTA
CTTTTTTATCCTGCTTCTTGACTCCGAGCTCTTCTTTCTCCTCCGCCTTT
ATTTTTTTCTCACCGTCCTATACGCTCTGTCTTCCCCATCTTCTACGCTC
TCCTTTCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGTTTAGTTCTATATCCTATTTATTTT
GATTGGTTTGTTTGGTTTTTTGGTGGTCGGCTTCTTGAGTTCTTTATATG
TTTTGATATGCCTTCTATCAGATGTGGGGTTAGTGAAGATATTCTTCCAA
TCTGTATGTTGCCGGTTTGTCTTATTGTGCCTTACAGAAACTTTTTAGTT
CTTGATCTTTGAGCATGAGCTATTACAATAGCCTGACTATTCTTCTGAAG
ATTCAACAATTCTGAAGGCCTCCCATTTTTATTCTACTGTGTTATGTTCA
ATAGATCAGCAGCTTCTCTGTCCCTCTGAAGAGGCTACAGTTTGAATTTT
CTTCCGCGGTCTCGCCCCCCCTGTCCCATAGGCCTCTCCTTTACTTCTTA
CCCCACCTTATCCATTTTTTCCCCCGTACCCCTTTATCTACTCTTTCTTT
ATCCCCCTCCTCTCATTTATTTTCCTTACGTCGACATGGTATTATGTCTC
TCTCTTTTGTGCCATTACCCTCCTTTTCTTTGTTTTCCCCCCGCTTTTTT
ATTCTCTCTATTCCCCTATTTTTCTTATCACACTCCTCTCTCTTTCCCAT
TATCTCTTCTCCGGCTTTTTCTTCCCTTTTCCTTCTCCCTTCTGCCCTGT
TTTCCTTCCATTATTCACCCCTTTATTATATTTTTTCCCACATTCATCCC
TAATCTCCATGTCTCTTTTCCACCCCCATCCCTTCCTTTTTTTTTTTCCC
TTCCGTCTCTTTTTTCCCTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_o23.b1 MSMg01no370_o23.b1 CHROMAT_FILE:
MSMg01no370_o23.b1 PHD_FILE: MSMg01no370_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:08 2005
         (276 letters)



>mm_chr18_29748285_29748956
          Length = 672

 Score =  485 bits (251), Expect = e-142
 Identities = 267/273 (97%), Gaps = 4/273 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtaaagtatatagctataattttattggttttggtaaaaaaaaagaaaaaaa 63
           |||||||||||| |||||||||||||||||||||| ||||||||||||||  ||||||||
Sbjct: 204 ggaattctgtaatgtatatagctataattttattg-ttttggtaaaaaaa--gaaaaaaa 260

                                                                       
Query: 64  ggcaaantctttcttttcctcggcttctcattttcttccactcagagaattatctgaaat 123
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaaa-tctttcttttcctcggcttctcattttcttccactcagagaattatctgaaat 319

                                                                       
Query: 124 ggaggagatttatgggaagattttgtggaagcttacaagcgatcctcctatggggacatc 183
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 ggaggagatttatgggaagattttgtggaagctcacaagcgatcctcctatggggacatc 379

                                                                       
Query: 184 tctgtccccacgagggctatagaaaggtaatttcgttgtaattttgaagaaagtagaagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctgtccccacgagggctatagaaaggtaatttcgttgtaattttgaagaaagtagaagg 439

                                            
Query: 244 gattaggtaaaaagtggggaggggtgaaatgaa 276
           |||||||||||||||||||||||||||||||||
Sbjct: 440 gattaggtaaaaagtggggaggggtgaaatgaa 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 672
Length adjustment: 9
Effective length of query: 267
Effective length of database: 663
Effective search space:   177021
Effective search space used:   177021
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)