BAC Information

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BAC

Clone NameMSMg01-371B11
Chromosome18 (Build37)
Map Location 18,973,278 - 18,973,521
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040647
Downstream geneLOC100040658, LOC665624, LOC665629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371B11.T7 (MSMg01no371_b11.b1)MSMg01-371B11.TJ (MSMg01no371_b11.g1)
ACCAG477683AG477684
length855785
length of high quality
(start - end)		244 (74 - 317)479 (43 - 521)
definitionCHROMAT_FILE: MSMg01no371_b11.b1 PHD_FILE: MSMg01no371_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:22 2005CHROMAT_FILE: MSMg01no371_b11.g1 PHD_FILE: MSMg01no371_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTAAACATTCTATTTAAGAGAAAAAT
TTAGATGAAGGGTATTATTTGTTAAAATGTTATCATTTCTAGAAAGGTTG
GATTTGCAAGAAGACACTAGAATTTGAAGCTATATTTTTATAATCTTTGA
TATAGCAACTACCTGGCTTTCACATATTTTTATTTGGGGATTCATGTAAG
CTAATAGCTTTTAGTGTCATACAGTTGTTTTGGAGCTGATGGTAATCTTT
TGAAGAATTTTTGTTTTTTAATATTTATTAATTGGGGATATAGCTGAATC
TGCTTTACCTAGTATGTATGACTGCCAGCCCCCCANAAAAGGAAAATACC
TCTATTTTTTCCGGTCACCCCCCCCAACCTTAATTTTTTTAAAATGGTGG
GAATGGATGGTAACAGTCTCTTGTGGTCCCTTACACTCCTCTTTTCGTGG
TAAAAACAAACCTCTATACGCCTTGGGGTCCGTATTCTTTTTTTGCTCCC
CTGGCGTTTGTGCCTTCCTTATATCATCGTTTCTATTACATCCTTCCTTT
TCTGGCGCGTTTGCCTCTCTTCACTTCGTCATTCGATTCTTTCTTCCCGT
TTTTTTTCTCATTTTTCTTCCCCTGCCTCCTCCTGTTCATTTCGCTAATT
TTCCCTTATCTCTCTCTATGTCCTTTCTTTTCCTCGTTCCCTCTCTATCT
TTTTCTTTCTTTTTTTTCCTGCTCCCTCGCTATCTTCCCTTCTCTCCTTC
GTTTTCTACGTCCCTCCTTTTTTATTCCGCTCTCCTTTTGTTTTTTCTTC
TGTCA

CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGGATCCGCGGAA
TTCCTTCATTCATTTCTCCACAGGTGTATCTGTTTTAGGGGAAAAGATCA
CATGGTTATTCCAAGCCATGCTTTATTATTATTTAAACTAAATGTTATTT
TTTATTAAAAATAAACATTATTTTTATTATTATTTAAACTAAACGTTTAA
ATATAAAGTCTAATCTTAAATGGAATAAGAAGTTTACAACAGATATATTT
ACATGTATTTTCTTTAAGAGTAAATATCTAGACATTCATTATCTGACACT
ATCTCCACACACCTACTAAAAGTTAAAAAATATAACTTTTTTGACTAAGT
TAAAAGTGATGCTTTGTATAGAGAAACCCAGTCAATATATTATCTTCTGT
CTTTACACCTACAATAAATCCTTAGTTCCTTTTTATGACTTTAGTTTACT
CTTTGTTAACCTCTTGGAATGTACTCTAAATTGCCTGTTTTCTAACTCAC
AAGCAATTAACTCATGACCCAAGAAGACTGGCAGTGTTCTAATTGCAGGT
TTTATATCAGTGAGGGCTTTAATAACGGGCTTAATAAATATTAGAATAAT
TTTTAGGAATTCTTATGGGATCATCCTAAAGAATTAAAAAATCCTCTATT
TGTCCATAATAGCGGCCCTACCAAAACGGTATTCTTGGTAAATCACCCGG
AAATTTTCCCCGGGGGGGTTTTTCTCTCCCATCAATTGTTTTTTATTTTT
TTTAAAATAACCACCGCTAGTCCTTATACATATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_b11.b1 MSMg01no371_b11.b1 CHROMAT_FILE:
MSMg01no371_b11.b1 PHD_FILE: MSMg01no371_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:22 2005
         (244 letters)



>mm_chr18_18973078_18973721
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaacattctatttaagagaaaaatttagatgaagggtattatttgttaaaatgttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaacattctatttaagagaaaaatttagatgaagggtattatttgttaaaatgttat 260

                                                                       
Query: 61  catttctagaaaggttggatttgcaagaagacactagaatttgaagctatatttttataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttctagaaaggttggatttgcaagaagacactagaatttgaagctatatttttataa 320

                                                                       
Query: 121 tctttgatatagcaactacctggctttcacatatttttatttggggattcatgtaagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttgatatagcaactacctggctttcacatatttttatttggggattcatgtaagcta 380

                                                                       
Query: 181 atagcttttagtgtcatacagttgttttggagctgatggtaatcttttgaagaatttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagcttttagtgtcatacagttgttttggagctgatggtaatcttttgaagaatttttg 440

               
Query: 241 tttt 244
           ||||
Sbjct: 441 tttt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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